1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
|
----------------------------------------------------------------------------
UniProt Knowledgebase:
Swiss-Prot Protein Knowledgebase
TrEMBL Protein Database
Swiss Institute of Bioinformatics (SIB); Geneva, Switzerland
European Bioinformatics Institute (EBI); Hinxton, United Kingdom
Protein Information Resource (PIR); Washington DC, USA
----------------------------------------------------------------------------
Description: Controlled vocabulary of keywords
Name: keywlist.txt
Release: 55.5 of 10-Jun-2008; EDITED TO REDUCE ITS FILE FOR BIOPYTHON
----------------------------------------------------------------------------
This document lists the keywords and categories used in the UniProt
knowledgebase (Swiss-Prot and TrEMBL). The keywords are classified into the
following 10 categories:
* Biological process
* Cellular component
* Coding sequence diversity
* Developmental stage
* Disease
* Domain
* Ligand
* Molecular function
* PTM
* Technical term
The definition of the keywords and categories usage as well as other
information is provided in the following format:
--------- --------------------------- ----------------------
Line code Content Occurrence in an entry
--------- --------------------------- ----------------------
ID Identifier (keyword) Once; starts a keyword entry
IC Identifier (category) Once; starts a category entry
AC Accession (KW-xxxx) Once
DE Definition Once or more
SY Synonyms Optional; once or more
GO Gene ontology (GO) mapping Optional; once or more
HI Hierarchy Optional; once or more
WW Relevant WWW site Optional; once or more
CA Category Once per keyword entry; absent
in category entries
// Terminator Once; ends an entry
__________________________________________________________________________
ID 2Fe-2S.
AC KW-0001
DE Protein which contains at least one 2Fe-2S iron-sulfur cluster: 2 iron
DE atoms complexed to 2 inorganic sulfides and 4 sulfur atoms of
DE cysteines from the protein.
SY Fe2S2; [2Fe-2S] cluster; [Fe2S2] cluster; Fe2/S2 (inorganic) cluster;
SY Di-mu-sulfido-diiron; 2 iron, 2 sulfur cluster binding.
GO GO:0051537; 2 iron, 2 sulfur cluster binding
HI Ligand: Iron; Iron-sulfur; 2Fe-2S.
HI Ligand: Metal-binding; 2Fe-2S.
CA Ligand.
//
IC Molecular function.
AC KW-9992
DE Keywords assigned to proteins due to their particular molecular
DE function.
//
ID Zymogen.
AC KW-0865
DE The enzymatically inactive precursor of mostly proteolytic enzymes.
SY Proenzyme.
HI PTM: Zymogen.
CA PTM.
//
-----------------------------------------------------------------------
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms
Distributed under the Creative Commons Attribution-NoDerivs License
-----------------------------------------------------------------------
|
