1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
|
# Copyright 2001 by Gavin E. Crooks. All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
"""Unit test for Dom.
This test requires the mini DOM file 'testDom.txt'
"""
import unittest
from Bio.SCOP import Dom
class DomTests(unittest.TestCase):
def setUp(self):
self.filename = "./SCOP/testDom.txt"
def testParse(self):
"""Test if all records in a DOM file are being read."""
count = 0
with open(self.filename) as f:
for record in Dom.parse(f):
count += 1
self.assertEqual(count, 10)
def testStr(self):
"""Test if we can convert each record to a string correctly."""
with open(self.filename) as f:
for line in f:
record = Dom.Record(line)
# End of line is platform dependent. Strip it off
self.assertEqual(str(record).rstrip(), line.rstrip())
def testError(self):
"""Test if a corrupt record raises the appropriate exception."""
corruptDom = "49xxx268\tsp\tb.1.2.1\t-\n"
self.assertRaises(ValueError, Dom.Record, corruptDom)
def testRecord(self):
"""Test one record in detail."""
recLine = "d7hbib_\t7hbi\tb:\t1.001.001.001.001.001"
rec = Dom.Record(recLine)
self.assertEqual(rec.sid, "d7hbib_")
self.assertEqual(rec.residues.pdbid, "7hbi")
self.assertEqual(rec.residues.fragments, (("b", "", ""),))
self.assertEqual(rec.hierarchy, "1.001.001.001.001.001")
if __name__ == "__main__":
runner = unittest.TextTestRunner(verbosity=2)
unittest.main(testRunner=runner)
|
