File: test_SearchIO_exonerate_text_index.py

package info (click to toggle)
python-biopython 1.78%2Bdfsg-4
  • links: PTS, VCS
  • area: main
  • in suites: bullseye
  • size: 65,756 kB
  • sloc: python: 221,141; xml: 178,777; ansic: 13,369; sql: 1,208; makefile: 131; sh: 70
file content (31 lines) | stat: -rw-r--r-- 956 bytes parent folder | download | duplicates (2)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
# Copyright 2012 by Wibowo Arindrarto.  All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license.  Please see the LICENSE file that should have been included
# as part of this package.

"""Tests for SearchIO exonerate-text indexing."""

import os
import unittest

from search_tests_common import CheckIndex


class ExonerateTextIndexCases(CheckIndex):

    fmt = "exonerate-text"

    def test_exn_22_m_est2genome(self):
        """Test exonerate-text indexing, single."""
        filename = os.path.join("Exonerate", "exn_22_m_est2genome.exn")
        self.check_index(filename, self.fmt)

    def test_exn_22_q_multiple(self):
        """Test exonerate-text indexing, single."""
        filename = os.path.join("Exonerate", "exn_22_q_multiple.exn")
        self.check_index(filename, self.fmt)


if __name__ == "__main__":
    runner = unittest.TextTestRunner(verbosity=2)
    unittest.main(testRunner=runner)