1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
|
# Copyright 2012 by Wibowo Arindrarto. All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
"""Tests for SearchIO fasta-m10 indexing."""
import os
import unittest
from search_tests_common import CheckIndex
class FastaM10IndexCases(CheckIndex):
fmt = "fasta-m10"
def test_output_002(self):
"""Test fasta-m10 indexing, fasta34, multiple queries."""
filename = os.path.join("Fasta", "output002.m10")
self.check_index(filename, self.fmt)
def test_output_001(self):
"""Test fasta-m10 indexing, fasta35, multiple queries."""
filename = os.path.join("Fasta", "output001.m10")
self.check_index(filename, self.fmt)
def test_output_005(self):
"""Test fasta-m10 indexing, ssearch35, multiple queries."""
filename = os.path.join("Fasta", "output005.m10")
self.check_index(filename, self.fmt)
def test_output_008(self):
"""Test fasta-m10 indexing, tfastx36, multiple queries."""
filename = os.path.join("Fasta", "output008.m10")
self.check_index(filename, self.fmt)
def test_output_009(self):
"""Test fasta-m10 indexing, fasta36, multiple queries."""
filename = os.path.join("Fasta", "output009.m10")
self.check_index(filename, self.fmt)
def test_output_010(self):
"""Test fasta-m10 indexing, fasta36, single query, no hits."""
filename = os.path.join("Fasta", "output010.m10")
self.check_index(filename, self.fmt)
def test_output_011(self):
"""Test fasta-m10 indexing, fasta36, single query, hits with single hsp."""
filename = os.path.join("Fasta", "output011.m10")
self.check_index(filename, self.fmt)
def test_output_012(self):
"""Test fasta-m10 indexing, fasta36, single query with multiple hsps."""
filename = os.path.join("Fasta", "output012.m10")
self.check_index(filename, self.fmt)
if __name__ == "__main__":
runner = unittest.TextTestRunner(verbosity=2)
unittest.main(testRunner=runner)
|
