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########################################
# Program: needle
# Rundate: Mon 14 Jul 2008 11:45:42
# Commandline: needle
# [-asequence] asis:TGTGGTTAGGTTTGGTTTTATTGGGGGCTTGGTTTGGGCCCACCCCAAATAGGGAGTGGGGGTATGACCTCAGATAGACGAGCTTATTTTAGGGCGGCGACTATAATTATTTCGTTTCCTACAAGGATTAAAGTTTTTTCTTTTACTGTGGGAGGGGGTTTGGTATTAAGAAACGCTAGTCCGGATGTGGCTCTCCATGATACTTATTGTGTAGTAGCTCATTTTCATTATGTTCTTCGAATGGGAGCAGTCATTGGTATTTTTTTGGTTTTTTTTTGAAATTTTTAGGTTATTTAGACCATTTTTTTTTGTTTCGCTAATTAGAATTTTATTAGCCTTTGGTTTTTTTTTATTTTTTGGGGTTAAGACAAGGTGTCGTTGAATTAGTTTAGCAAAATACTGCTTAAGGTAGGCTATAGGATCTACCTTTTATCTTTCTAATCTTTTGTTTTAGTATAATTGGTCTTCGATTCAACAATTTTTAGTCTTCAGTCTTTTTTTTTATTTTGAAAAGGTTTTAACACTCTTGGTTTTGGAGGCTTTGGCTTTCTTCTTACTCTTAGGAGGATGGGCGCTAGAAAGAGTTTTAAGAGGGTGTGAAAGGGGGTTAATAGC
# [-bsequence] asis:TTATTAATCTTATGGTTTTGCCGTAAAATTTCTTTCTTTATTTTTTATTGTTAGGATTTTGTTGATTTTATTTTTCTCAAGAATTTTTAGGTCAATTAGACCGGCTTATTTTTTTGTCAGTGTTTAAAGTTTTATTAATTTTTGGGGGGGGGGGGAGACGGGGTGTTATCTGAATTAGTTTTTGGGAGTCTCTAGACATCTCATGGGTTGGCCGGGGGCCTGCCGTCTATAGTTCTTATTCCTTTTAAGGGAGTAAGAATTTCGATTCAGCAACTTTAGTTCACAGTCTTTTTTTTTATTAAGAAAGGTTT
# -filter
# Align_format: srspair
# Report_file: stdout
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: asis
# 2: asis
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 667
# Identity: 210/667 (31.5%)
# Similarity: 210/667 (31.5%)
# Gaps: 408/667 (61.2%)
# Score: 561.0
#
#
#=======================================
asis 1 TGTGGTTAGGTTTGGTTTTATTGGGGGCTTGGTTTGGGCCCACCCCAAAT 50
asis 0 -------------------------------------------------- 0
asis 51 AGGGAGTGGGGGTATGACCTCAGATAGACGAGCTTATTTTAGGGCGGCGA 100
asis 0 -------------------------------------------------- 0
asis 101 CTATAATTATTTCGTTTCCTACAAGGATTAAAGTTTTTTCTTTTACTGTG 150
asis 0 -------------------------------------------------- 0
asis 151 GGAGGGGGTTTGGTATTAAGAAACGCTAGTCCGGATGTGGCTCTCCATGA 200
.||||||
asis 1 ------------TTATTAA------------------------------- 7
asis 201 TACTTATTGT------GTAGTAGCTCATTTTCATTATGTTCTTCGAATGG 244
.|||||.|| |||..|..|| ||||.||||.||.| ||.|
asis 8 -TCTTATGGTTTTGCCGTAAAATTTC--TTTCTTTATTTTTT----ATTG 50
asis 245 GAGCAGTCATTGGTATTTTTTTGGTTTTTTTTT------GAAATTTTTAG 288
||.|.|||||.|||.||||.|||| | |||||||||
asis 51 ---------TTAGGATTTTGTTGATTTTATTTTTCTCAAG-AATTTTTAG 90
asis 289 GTTATTTAGACC-----ATTTTTTTTT--GTTTCGCTAATTAGAATTTTA 331
||.|.||||||| ||||||||.| ||.| |||.|.|||||
asis 91 GTCAATTAGACCGGCTTATTTTTTTGTCAGTGT------TTAAAGTTTTA 134
asis 332 TTAGCCTTTGGTTTTTTTTTATTTTT----TGGGGTTAAGACAAGGTGTC 377
||| |||||| .||||...||||..|||||.
asis 135 TTA-----------------ATTTTTGGGGGGGGGGGGAGACGGGGTGTT 167
asis 378 GT-TGAATTAGTTTAGCAAAATACTGCTTAAGGTAGGCTATA-------- 418
.| ||||||||||| || ||.||.||.||
asis 168 ATCTGAATTAGTTT-------------TT--GGGAGTCTCTAGACATCTC 202
asis 419 -------------GGATCTACCTTTTATCTTTCTAAT--CTTTT----GT 449
||..||.||.|.|||..||||.|| ||||| |
asis 203 ATGGGTTGGCCGGGGGCCTGCCGTCTATAGTTCTTATTCCTTTTAAGGG- 251
asis 450 TTTAGT-ATAATTGGTCTTCGATTCAACAATTTTTAGTCTTCAGTCTTTT 498
||| |.||| |||||||||.||| .||||||...|||||||||
asis 252 ---AGTAAGAAT-----TTCGATTCAGCAA-CTTTAGTTCACAGTCTTTT 292
asis 499 TTTTTATTTTGAAAAGGTTTTAACACTCTTGGTTTTGGAGGCTTTGGCTT 548
||||||||..| ||||||||
asis 293 TTTTTATTAAG-AAAGGTTT------------------------------ 311
asis 549 TCTTCTTACTCTTAGGAGGATGGGCGCTAGAAAGAGTTTTAAGAGGGTGT 598
asis 311 -------------------------------------------------- 311
asis 599 GAAAGGGGGTTAATAGC 615
asis 311 ----------------- 311
#---------------------------------------
#---------------------------------------
|
