File: length_coords_mismatch.maf

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##maf version=1 scoring=autoMZ.v1
a score=6441.000000
s mm8.chr10               3009319 162 + 129993255 TCATAGGTATTTATTTTTAAATATGGTTTGCTTTATGGCTAGAACACACCGATTACTTAAAATAGGATTAACC--CCCATACACTTTAAAAATGATTAAACAACATTTCTGCTGCTCGCTCACATTCTTCATAGAAGATGACATAATGTATTTTCCTTTTGGTT
s oryCun1.scaffold_133159   11087 164 +     13221 TCACAGATATTTACTATTAAATATGGTTTGTTATATGGTTACGGTTCATAGGTTACTTGGAATTGGATTAACCTTCTTATTCATTGCAGAATTGGTTACACTGTGTTCTTGACCTTTGCTTGTTTTCTCCATGGAAACTGATGTCAAATACTTTCCCTTTGGTT
q oryCun1.scaffold_133159                         99569899999998999999999999999999999999999999999999999999999999999999999757878999975999999999999999979999999999997899999999999997997999999869999996999988997997999999
i oryCun1.scaffold_133159 N 0 N 0

a score=0.000000
s mm9.chr10                         3013218 319 + 129993255 agccaggcgtggtggcacacacctttactcccagcatttggggggcagaggcaggtggatctgtgagtttgaggccagcctggtctacagagggagtctcaggacagccagagctacacagaaataacctgcctagaaaaacaaaacaaaacaaaacatcaaaactcaaaacaaaTAAAAAAAATAAAAAACCCAACCTAAACCAAATAACAAAACAAA
e tupBel1.scaffold_114895.1-498454   167376 4145 -    498454 I
e echTel1.scaffold_288249             87661 7564 +    100002 I
e otoGar1.scaffold_334.1-359464      181217 2931 -    359464 I
e hg18.chr6                        15861557  14 - 170899992 I
e panTro2.chr6                     16380105  14 - 173908612 I
e ponAbe2.chr6                     16161337   2 - 174210431 I