File: sequence.fa

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>seq11111
GTATACCCCTTGGGCAGATTTACCCCTCTCGTCCCTGTCCCGTGACGGAATCGGGTAATCCATCGACTCT
CGACCTGNNNNNNNNNNNNNNNNNNNCGCGTTTGAGTGTCGGGGGTGCTGTCGTTGTGTCCCCTGTGAGC
CACAGAAATGCATCTTTCCTGAGGACGAGGACGGTAGTcgtgaagcaccgtcggTTTGATTTTATTCAGC
CTGCAGATTGGATGCATAATGGTACACATTATTCTTTATGCTGGTTCCCGACATCATTGTGGTTCGCTGC
TCAACAATCCTGGGTCGTTTGTTGANNNNNNNNNNNNNNNNNNNNNNNCTGAATGCTCTAGTAAATAGCT
AGGGAGaacattagatgtggCAGCAGTAGCTTCTTCATCTGTCGTTAACCTTTGCCGGTCTGTTGCCTAT
ATCCCTAAGTCTGGTTAATGGCTCATCCTCATGTGAAGATGGGCCGGCATGCGAGCACCG
>seq222
TTGATCGGTGACAAATTTTTTACAAAGAACTGTAGGACTTGCTACTTCTCCCTCCCGCGTTGGTCGGTCT
GGGACCAAGACCCCGCTAGAtcccctcttcaaNNNNNNNNNNNNNNNNNNNNNNNNNGTGATGAGAATCT
GGGCCATCTACNNNNNNNNNNnnnnnnnngccgcggtacgtggTAGGAACAGTGTATCATCACAGGCGTC
GGCGCATGCGGTAGAGCAAACGGAATACTCTAGTGAGATTCAGCTTTGTACCATCTACA
>seq3333
cgcgtaacgagaTTCCCACGCACTGATTGAGGATACGAACAACGGGAAGGTAATCACTTTGGCATCCATG
CAGGCTTTCTTTTGGTTTCGCTGTATCGAATTcagatcgggtagatgACCTAGGTTAGTACATTCACTAG
GGAGAGTAAAGTGGAGCCCGGGTACCTCGGCTTGTGCTGTTGCTTAAATCGGCCCTCGCGGTTGTCGATA
AACTCGCTTAGTCGAACGACTCACACGGAACGTAATATTTGCCCGCGCATAGGACCTACCCAACTTCGGG
AATGATATTTAGatcgaacggcAATAGACAGAGGGGCTGAGCAGGTCCAAAAACACAGAGGATACTTACG
CACTCTTGCGGGGGTATTCCCCTGATCCCCCTCAAAACGTACGACCGTACCAGCCAGGTCCGCCGTTTAG
CTGTGCCCCCGTCATCCAAAGTttcatcctcagctctacatggttgcgggttcaaattaacgaggatctg
>seq4
NNNNNNNNNNNNNNNNNGACAAGGTTCCTGGGGTGATGCACACGCTCGGAGGGTGGGTAAATCAAAACGG
CGGAAATAATGTCATACATGTAACAGATTATCAACCCGtagtcttccgctagtCAAGAATTTAGTAATGG
TGTGAGGGAGGGGAAATTCTGATCGCACGAATATGAAGTGTAATGACGGCCGAGAAGCCGAGGAGAAAGC
TCACAGTGATCCGCATTCGTCTGCTCCATGGTTTATCCATCGGCGCCGGGAATTTGTATACAAGACCCTG
CGGTAATTATGCACCTAACGCCAGTATTGGCATTAGATCTAGTCGCNNNNNNNNNNNNNNNTG
>seq555
CATGTATCGCATGCGGGACGTTTtgtcctgacataggttgTAGTTCCGTCATACCGTGAGATGGGTCCCT
TCACCCGATGGAGCTAGAAGGAAGATTTGCACCATGGATGGNNNNNNNNNNNNNNNN
>seq6
ACGTacgtNNNNnn