File: fourcolumns.pfm

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python-biopython 1.85%2Bdfsg-4
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# CIS-BP
Pos A   C   G   T
1   0.00961538461538462 0.00961538461538462 0.00961538461538462 0.971153846153846
2   0.00961538461538462 0.00961538461538462 0.00961538461538462 0.971153846153846
3   0.971153846153846   0.00961538461538462 0.00961538461538462 0.00961538461538462
4   0.00961538461538462 0.00961538461538462 0.00961538461538462 0.971153846153846
5   0.00961538461538462 0.971153846153846   0.00961538461538462 0.00961538461538462
6   0.971153846153846   0.00961538461538462 0.00961538461538462 0.00961538461538462
7   0.00961538461538462 0.971153846153846   0.00961538461538462 0.00961538461538462
8   0.00961538461538462 0.00961538461538462 0.00961538461538462 0.971153846153846

# C2H2-ZFs
Gene    ENSG00000197372
Pos A   C   G   T
1   0.341303    0.132427    0.117054    0.409215
2   0.283785    0.077066    0.364552    0.274597
3   0.491055    0.078208    0.310520    0.120217
4   0.492621    0.076117    0.131007    0.300256
5   0.250645    0.361464    0.176504    0.211387
6   0.276694    0.498070    0.197793    0.027444
7   0.056317    0.014631    0.926202    0.002850
8   0.004470    0.007769    0.983797    0.003964
9   0.936213    0.058787    0.002387    0.002613
10  0.004352    0.004030    0.002418    0.989200
11  0.013277    0.008165    0.001991    0.976567
12  0.968132    0.002263    0.002868    0.026737
13  0.397623    0.052017    0.350783    0.199577
14  0.000000    0.000000    1.000000    0.000000
15  1.000000    0.000000    0.000000    0.000000
16  0.000000    0.000000    1.000000    0.000000
17  0.000000    0.000000    1.000000    0.000000
18  1.000000    0.000000    0.000000    0.000000
19  0.000000    1.000000    0.000000    0.000000
20  1.000000    0.000000    0.000000    0.000000

# C2H2-ZFs
Gene    FBgn0000210
Motif   M1734_0.90
Pos A   C   G   T
1   0.25    0.0833333   0.0833333   0.583333
2   0.75    0.166667    0.0833333   0
3   0.833333    0   0   0.166667
4   1   0   0   0
5   0   0.833333    0.0833333   0.0833333
6   0.333333    0   0   0.666667
7   0.833333    0   0   0.166667
8   0.5 0   0.333333    0.166667
9   0.5 0.0833333   0.166667    0.25
10  0.333333    0.25    0.166667    0.25
11  0.166667    0.25    0.416667    0.166667

# FlyFactorSurvey (Cluster Buster)
>AbdA_Cell_FBgn0000014
1   3   0   14
0   0   0   18
16  0   0   2
18  0   0   0
1   0   0   17
0   0   6   12
15  1   2   0

# HOMER
>ATGACTCATC AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer    6.049537    -1.782996e+03   0   9805.3,5781.0,3085.1,2715.0,0.00e+00
0.419   0.275   0.277   0.028
0.001   0.001   0.001   0.997
0.010   0.002   0.965   0.023
0.984   0.003   0.001   0.012
0.062   0.579   0.305   0.054
0.026   0.001   0.001   0.972
0.043   0.943   0.001   0.012
0.980   0.005   0.001   0.014
0.050   0.172   0.307   0.471
0.149   0.444   0.211   0.195

# HOCOMOCO
> AHR_si
40.51343240527031  18.259112547756697  56.41253757072521  38.77363485291994
10.877470982533044  11.870876719950774  34.66312982331297  96.54723985087516
21.7165707818416  43.883079837598544  20.706746561638717  67.6523201955933
2.5465132509466635  1.3171620263517245  145.8637051322628  4.231336967110781
0.0  150.35847450464382  1.4927836298652875  2.1074592421627525
3.441039751299748  0.7902972158110341  149.37613720253387  0.3512432070271259
0.0  3.441039751299748  0.7024864140542533  149.81519121131782
0.0  0.0  153.95871737667187  0.0
43.07922333291745  66.87558226865211  16.159862546986584  27.844049228115868

# Neph
UW.Motif.0001   atgactca
0.772949    0.089579    0.098612    0.038860
0.026652    0.004653    0.025056    0.943639
0.017663    0.023344    0.918728    0.040264
0.919596    0.025414    0.029759    0.025231
0.060312    0.772259    0.104968    0.062462
0.037406    0.020643    0.006667    0.935284
0.047316    0.899024    0.026928    0.026732
0.948639    0.019497    0.005737    0.026128

# Tiffin
T   A   G   C
30  0   28  40
0   0   0   99
0   55  14  29
0   99  0   0
20  78  0   0
0   52  7   39
19  46  11  22
0   60  38  0
0   33  0   66
73  0   25  0
99  0   0   0