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From b6b932e5c0bd65384015c759ebf281e561e4da07 Mon Sep 17 00:00:00 2001
From: Jeet Sukumaran <jeetsukumaran@gmail.com>
Date: Tue, 23 Jun 2015 10:04:34 -0400
Subject: [PATCH] Do not run PAUP-based tests unless path to PAUP is provided
---
README.rst | 15 ++
dendropy/interop/paup.py | 2 +-
dendropy/test/test_datamodel_split_bitmasks.py | 221 +++++++++++++------------
3 files changed, 129 insertions(+), 109 deletions(-)
--- a/README.rst
+++ b/README.rst
@@ -67,6 +67,21 @@ Testing
If this variable is not set or set to "NONE", then any tests that rely on
PAUP* will NOT be run.
+.. note::
+
+ Note that some tests rely on PAUP* being available on your system.
+ You will need to set the environmental variable ``DENDROPY_PAUP_EXECUTABLE_PATH`` to the path
+ of the PAUP* executable for these tests to be run, e.g.::
+
+ DENDROPY_PAUP_EXECUTABLE_PATH=/usr/local/bin/paup python setup.py test
+
+ or::
+
+ DENDROPY_PAUP_EXECUTABLE_PATH=/usr/local/bin/paup python -m unittest
+
+ If this variable is not set or set to "NONE", then any tests that rely on
+ PAUP* will NOT be run.
+
Tests can be run by typing::
$ python -m dendropy.test
|
