File: bird_orders.nex

package info (click to toggle)
python-dendropy 4.2.0%2Bdfsg-1
  • links: PTS, VCS
  • area: main
  • in suites: stretch
  • size: 68,392 kB
  • ctags: 3,947
  • sloc: python: 41,840; xml: 1,400; makefile: 15
file content (72 lines) | stat: -rw-r--r-- 1,843 bytes parent folder | download | duplicates (6)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
#NEXUS
[R-package APE, Fri Nov 27 00:49:56 2009

     This data set describes the phylogenetic relationships of the
     orders of birds as reported by Sibley and Ahlquist (1990). Sibley
     and Ahlquist inferred this phylogeny from an extensive number of
     DNA/DNA hybridization experiments. The ``tapestry'' reported by
     these two authors (more than 1000 species out of the ca. 9000
     extant bird species) generated a lot of debates.

     The present tree is based on the relationships among orders. The
     branch lengths were calculated from the values of Delta T50H as
     found in Sibley and Ahlquist (1990, fig. 353).

]

BEGIN TAXA;
	DIMENSIONS NTAX = 23;
	TAXLABELS
		Struthioniformes
		Tinamiformes
		Craciformes
		Galliformes
		Anseriformes
		Turniciformes
		Piciformes
		Galbuliformes
		Bucerotiformes
		Upupiformes
		Trogoniformes
		Coraciiformes
		Coliiformes
		Cuculiformes
		Psittaciformes
		Apodiformes
		Trochiliformes
		Musophagiformes
		Strigiformes
		Columbiformes
		Gruiformes
		Ciconiiformes
		Passeriformes
	;
END;
BEGIN TREES;
	TRANSLATE
		1	Struthioniformes,
		2	Tinamiformes,
		3	Craciformes,
		4	Galliformes,
		5	Anseriformes,
		6	Turniciformes,
		7	Piciformes,
		8	Galbuliformes,
		9	Bucerotiformes,
		10	Upupiformes,
		11	Trogoniformes,
		12	Coraciiformes,
		13	Coliiformes,
		14	Cuculiformes,
		15	Psittaciformes,
		16	Apodiformes,
		17	Trochiliformes,
		18	Musophagiformes,
		19	Strigiformes,
		20	Columbiformes,
		21	Gruiformes,
		22	Ciconiiformes,
		23	Passeriformes
	;
	TREE * UNTITLED = [&R] (((1:21.8,2:21.8):4.1,((3:21.6,4:21.6):1.3,5:22.9):3):2.1,(6:27,(7:26.3,((8:24.4,((9:20.8,10:20.8):2.6,(11:22.1,12:22.1):1.3):1):0.6,(13:24.5,(14:23.7,(15:23.1,(((16:21.3,17:21.3):0.6,(18:20.4,19:20.4):1.5):0.6,((20:20.8,(21:20.1,22:20.1):0.7):0.8,23:21.6):0.9):0.6):0.6):0.8):0.5):1.3):0.7):1);
END;