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python-dendropy 4.2.0%2Bdfsg-1
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  • sloc: python: 41,840; xml: 1,400; makefile: 15

Folder: trees

d .. (parent)
- - rw-r--r-- 12,061 APG_Angiosperms.newick
- - rw-r--r-- 67,103 APG_Angiosperms.nexus
- - rw-r--r-- 360,172 Bininda-emonds_2007_mammals.newick
- - rw-r--r-- 400,201 Bininda-emonds_2007_mammals.nexus
- - rw-r--r-- 36,595 GEBA.tree.newick
- - rw-r--r-- 85,731 GEBA.tree.nexus
- - rw-r--r-- 463,080 Jetz_et_al_2012_Aves.sample.tree.newick
- - rw-r--r-- 851,776 Jetz_et_al_2012_Aves.sample.tree.nexus
- - rw-r--r-- 1,299,764 Smith_2001_angiosperms.newick
- - rw-r--r-- 2,932,929 Smith_2001_angiosperms.nexus
- - rw-r--r-- 11,224 apternodus.tre
- - rw-r--r-- 3,395,975 bipartition_encoding_fixture.json
- - rw-r--r-- 551 bird_orders.newick
- - rw-r--r-- 1,843 bird_orders.nex
- - rw-r--r-- 166,661 cetaceans.mb.no-clock.mcmc.trees
- - rw-r--r-- 241,787 cetaceans.mb.no-clock.mcmc.weighted-01.trees
- - rw-r--r-- 241,818 cetaceans.mb.no-clock.mcmc.weighted-02.trees
- - rw-r--r-- 241,821 cetaceans.mb.no-clock.mcmc.weighted-03.trees
- - rw-r--r-- 170,426 cetaceans.mb.strict-clock.mcmc.trees
- - rw-r--r-- 265,570 cetaceans.mb.strict-clock.mcmc.weighted-01.trees
- - rw-r--r-- 265,459 cetaceans.mb.strict-clock.mcmc.weighted-02.trees
- - rw-r--r-- 265,371 cetaceans.mb.strict-clock.mcmc.weighted-03.trees
- - rw-r--r-- 123,591 cetaceans.raxml.bootstraps.trees
- - rw-r--r-- 128,057 cetaceans.raxml.bootstraps.weighted-01.trees
- - rw-r--r-- 127,933 cetaceans.raxml.bootstraps.weighted-02.trees
- - rw-r--r-- 127,882 cetaceans.raxml.bootstraps.weighted-03.trees
- - rw-r--r-- 679 cetaceans.taxa.nex
- - rw-r--r-- 459 community.tree.newick
- - rw-r--r-- 662 curated-with-translate-block-and-internal-taxa.nex
- - rw-r--r-- 649 curated-with-translate-block-and-no-taxa-block-and-untranslated-internal-taxa.nex
- - rw-r--r-- 549 curated-with-translate-block-and-no-taxa-block.nex
- - rw-r--r-- 740 curated-with-translate-block-and-untranslated-internal-taxa.nex
- - rw-r--r-- 8,002 deepcoal1.nex
- - rw-r--r-- 1,463,858 dendropy-test-trees-multifurcating-rooted-annotated.json
- - rw-r--r-- 559,581 dendropy-test-trees-multifurcating-rooted-annotated.newick
- - rw-r--r-- 1,858,574 dendropy-test-trees-multifurcating-rooted-annotated.nexml
- - rw-r--r-- 575,732 dendropy-test-trees-multifurcating-rooted-annotated.nexus
- - rw-r--r-- 432,403 dendropy-test-trees-multifurcating-rooted-annotated.nexus-metadata-comments.json
- - rw-r--r-- 476,971 dendropy-test-trees-multifurcating-rooted.json
- - rw-r--r-- 16,360 dendropy-test-trees-multifurcating-rooted.newick
- - rw-r--r-- 144,333 dendropy-test-trees-multifurcating-rooted.nexml
- - rw-r--r-- 17,455 dendropy-test-trees-multifurcating-rooted.nexus
- - rw-r--r-- 479,078 dendropy-test-trees-multifurcating-unrooted.json
- - rw-r--r-- 16,441 dendropy-test-trees-multifurcating-unrooted.newick
- - rw-r--r-- 144,777 dendropy-test-trees-multifurcating-unrooted.nexml
- - rw-r--r-- 17,536 dendropy-test-trees-multifurcating-unrooted.nexus
- - rw-r--r-- 1,149,900 dendropy-test-trees-n10-rooted-treeshapes.json
- - rw-r--r-- 41,258 dendropy-test-trees-n10-rooted-treeshapes.newick
- - rw-r--r-- 330,506 dendropy-test-trees-n10-rooted-treeshapes.nexml
- - rw-r--r-- 43,323 dendropy-test-trees-n10-rooted-treeshapes.nexus
- - rw-r--r-- 27,178 dendropy-test-trees-n12-x2.json
- - rw-r--r-- 972 dendropy-test-trees-n12-x2.newick
- - rw-r--r-- 8,771 dendropy-test-trees-n12-x2.nexml
- - rw-r--r-- 1,246 dendropy-test-trees-n12-x2.nexus
- - rw-r--r-- 2,165,169 dendropy-test-trees-n14-unrooted-treeshapes.json
- - rw-r--r-- 78,030 dendropy-test-trees-n14-unrooted-treeshapes.newick
- - rw-r--r-- 618,809 dendropy-test-trees-n14-unrooted-treeshapes.nexml
- - rw-r--r-- 80,886 dendropy-test-trees-n14-unrooted-treeshapes.nexus
- - rw-r--r-- 1,186,449 dendropy-test-trees-n33-unrooted-annotated-x10a.json
- - rw-r--r-- 449,259 dendropy-test-trees-n33-unrooted-annotated-x10a.newick
- - rw-r--r-- 1,469,001 dendropy-test-trees-n33-unrooted-annotated-x10a.nexml
- - rw-r--r-- 458,003 dendropy-test-trees-n33-unrooted-annotated-x10a.nexus
- - rw-r--r-- 343,433 dendropy-test-trees-n33-unrooted-annotated-x10a.nexus-metadata-comments.json
- - rw-r--r-- 3,961,477 dendropy-test-trees-n33-unrooted-x100a.json
- - rw-r--r-- 145,200 dendropy-test-trees-n33-unrooted-x100a.newick
- - rw-r--r-- 1,122,377 dendropy-test-trees-n33-unrooted-x100a.nexml
- - rw-r--r-- 147,603 dendropy-test-trees-n33-unrooted-x100a.nexus
- - rw-r--r-- 396,222 dendropy-test-trees-n33-unrooted-x10a.json
- - rw-r--r-- 14,520 dendropy-test-trees-n33-unrooted-x10a.newick
- - rw-r--r-- 114,023 dendropy-test-trees-n33-unrooted-x10a.nexml
- - rw-r--r-- 15,212 dendropy-test-trees-n33-unrooted-x10a.nexus
- - rw-r--r-- 396,255 dendropy-test-trees-n33-unrooted-x10b.json
- - rw-r--r-- 14,520 dendropy-test-trees-n33-unrooted-x10b.newick
- - rw-r--r-- 114,056 dendropy-test-trees-n33-unrooted-x10b.nexml
- - rw-r--r-- 15,212 dendropy-test-trees-n33-unrooted-x10b.nexus
- - rw-r--r-- 23,030 feb032009.splits.csv
- - rw-r--r-- 150,654 feb032009.trees.newick
- - rw-r--r-- 150,321 feb032009.trees.nexus
- - rw-r--r-- 2,685 hiv1.newick
- - rw-r--r-- 6,954 hiv1.nexus
- - rw-r--r-- 231,839 incomplete_leaves_rooted.dendropy-pruned.nex
- - rw-r--r-- 231,889 incomplete_leaves_rooted.paup-pruned.nex
- - rw-r--r-- 476,686 incomplete_leaves_rooted.pre-pruned.nex
- - rw-r--r-- 1,376 incomplete_leaves_rooted.pruned_taxa.txt
- - rw-r--r-- 1,294 incomplete_leaves_rooted.retained_taxa.txt
- - rw-r--r-- 304,893 incomplete_leaves_unrooted.dendropy-pruned.nex
- - rw-r--r-- 273,337 incomplete_leaves_unrooted.paup-pruned.nex
- - rw-r--r-- 505,990 incomplete_leaves_unrooted.pre-pruned.nex
- - rw-r--r-- 1,103 incomplete_leaves_unrooted.pruned_taxa.txt
- - rw-r--r-- 1,567 incomplete_leaves_unrooted.retained_taxa.txt
- - rw-r--r-- 150,319 issue_mth_2009-02-03.rooted.nexus
- - rw-r--r-- 150,319 issue_mth_2009-02-03.unrooted.nexus
- - rw-r--r-- 33,844 maj-rule-bug1.trees.nexus
- - rw-r--r-- 30,813 maj-rule-bug2.trees.nexus
- - rw-r--r-- 1,079 multitreeblocks.nex
- - rw-r--r-- 379 multitreeblocks2.nex
- - rw-r--r-- 11,949 primates.beast.mcct.meanh.tre
- - rw-r--r-- 11,943 primates.beast.mcct.medianh.tre
- - rw-r--r-- 505 primates.beast.mcct.noedgelens.tree
- - rw-r--r-- 4,562,362 primates.beast.mcmc.trees
- - rw-r--r-- 837 primates.trees.nexus
- - rw-r--r-- 218,654 prune_rooted.dendropy-pruned.nex
- - rw-r--r-- 218,711 prune_rooted.paup-pruned.nex
- - rw-r--r-- 476,454 prune_rooted.pre-pruned.nex
- - rw-r--r-- 1,450 prune_rooted.pruned_taxa.txt
- - rw-r--r-- 1,220 prune_rooted.retained_taxa.txt
- - rw-r--r-- 231,830 prune_unrooted.dendropy-pruned.nex
- - rw-r--r-- 200,787 prune_unrooted.paup-pruned.nex
- - rw-r--r-- 505,755 prune_unrooted.pre-pruned.nex
- - rw-r--r-- 1,517 prune_unrooted.pruned_taxa.txt
- - rw-r--r-- 1,153 prune_unrooted.retained_taxa.txt
- - rw-r--r-- 56,557 pythonidae.annotated.bad.nexml
- - rw-r--r-- 56,531 pythonidae.annotated.nexml
- - rw-r--r-- 3,219,290 pythonidae.beast.mcmc.trees
- - rw-r--r-- 21,973 pythonidae.beast.summary.tre
- - rw-r--r-- 3,411 pythonidae.mb.con
- - rw-r--r-- 135,222 pythonidae.mb.run1.t
- - rw-r--r-- 135,192 pythonidae.mb.run2.t
- - rw-r--r-- 135,169 pythonidae.mb.run3.t
- - rw-r--r-- 135,123 pythonidae.mb.run4.t
- - rw-r--r-- 635,635 pythonidae.mlboots.newick.tre
- - rw-r--r-- 656,470 pythonidae.mlboots.nexus.tre
- - rw-r--r-- 1,333 pythonidae.mle.newick
- - rw-r--r-- 2,278 pythonidae.mle.nex
- - rw-r--r-- 911 pythonidae.mle.numbered-nodes.newick
- - rw-r--r-- 124,861 pythonidae.random.bd0301.midpoint-rooted.tre
- - rw-r--r-- 159,173 pythonidae.random.bd0301.randomly-rooted.tre
- - rw-r--r-- 152,974 pythonidae.random.bd0301.tre
- - rw-r--r-- 15,240 pythonidae.reference-trees.newick
- - rw-r--r-- 36,974 pythonidae.reference-trees.nexus
- - rw-r--r-- 36,213 pythonidae.reference-trees.no-taxa-block.nexus
- - rw-r--r-- 17,183 pythonidae.reference-trees.no-taxa-no-translate-block.nexus
- - rw-r--r-- 34,844 pythonidae.reference-trees.taxon-numbers-only.newick
- - rw-r--r-- 3,347 rana.trees.nexus
- - rw-r--r-- 59,639 treebase_s373.xml