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#! /usr/bin/env python
##############################################################################
## DendroPy Phylogenetic Computing Library.
##
## Copyright 2010-2015 Jeet Sukumaran and Mark T. Holder.
## All rights reserved.
##
## See "LICENSE.rst" for terms and conditions of usage.
##
## If you use this work or any portion thereof in published work,
## please cite it as:
##
## Sukumaran, J. and M. T. Holder. 2010. DendroPy: a Python library
## for phylogenetic computing. Bioinformatics 26: 1569-1571.
##
##############################################################################
from dendropy.test.support import mockreader
from dendropy import dataio
import dendropy
import unittest
class DendropyDataIOTestMockTreeReader(mockreader.MockReader):
def __init__(self):
mockreader.MockReader.__init__(self)
def process_read_call(self):
tns = self.taxon_namespace_factory(label="test1")
tree_list = self.tree_list_factory(label="test1", taxon_namespace=tns)
tree = tree_list.new_tree()
product = self.Product(
taxon_namespaces=[tns],
tree_lists=[tree_list],
char_matrices=None)
return product
class MockTestTreeTypeDerivedFromDendropyTree(dendropy.Tree):
pass
class TestCustomTreeType(unittest.TestCase):
@classmethod
def setUpClass(cls):
dataio.register_reader("dendropy_test_mock_tree_reader", DendropyDataIOTestMockTreeReader)
def test_get_from(self):
tree = MockTestTreeTypeDerivedFromDendropyTree.get_from_string("", "dendropy_test_mock_tree_reader")
self.assertEqual(type(tree), MockTestTreeTypeDerivedFromDendropyTree)
if __name__ == "__main__":
unittest.main()
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