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#! /usr/bin/env python
##############################################################################
## DendroPy Phylogenetic Computing Library.
##
## Copyright 2010-2015 Jeet Sukumaran and Mark T. Holder.
## All rights reserved.
##
## See "LICENSE.rst" for terms and conditions of usage.
##
## If you use this work or any portion thereof in published work,
## please cite it as:
##
## Sukumaran, J. and M. T. Holder. 2010. DendroPy: a Python library
## for phylogenetic computing. Bioinformatics 26: 1569-1571.
##
##############################################################################
"""
Annotation tests.
"""
import collections
import unittest
import copy
from dendropy.datamodel import basemodel
from dendropy.test.support import compare_and_validate
class TestObject(basemodel.Annotable, basemodel.DataObject):
pass
class DummyX(TestObject):
def __init__(self, data=None):
self.data = data
class AnnotableDeepCopyTester(compare_and_validate.Comparator, unittest.TestCase):
def test_deep_copy(self):
x1 = DummyX()
a1 = x1.annotations.add_new(name="a1", value="1")
a2 = x1.annotations.add_new(name="a2", value="2")
a3 = x1.annotations.add_new(name="a3", value="3")
x2 = copy.deepcopy(x1)
self.compare_distinct_annotables(x1, x2)
def test_nested_deep_copy(self):
x1 = DummyX()
a1 = x1.annotations.add_new(name="a1", value="1")
a2 = x1.annotations.add_new(name="a2", value="2")
a3 = x1.annotations.add_new(name="a3", value="3")
a4 = a3.annotations.add_new(name="a4", value="4")
a5 = a3.annotations.add_new(name="a5", value="5")
a6 = a5.annotations.add_new(name="a6", value="6")
x2 = copy.deepcopy(x1)
self.compare_distinct_annotables(x1, x2)
if __name__ == "__main__":
unittest.main()
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