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#ifndef BAM_TVIEW_H
#define BAM_TVIEW_H
#include <ctype.h>
#include <assert.h>
#include <string.h>
#include <math.h>
#include <unistd.h>
#include <stdarg.h>
#include "bam.h"
#include "faidx.h"
#include "bam2bcf.h"
#include "sam_header.h"
#include "khash.h"
KHASH_MAP_INIT_STR(kh_rg, const char *)
typedef struct AbstractTview {
int mrow, mcol;
bam_index_t *idx;
bam_lplbuf_t *lplbuf;
bam_header_t *header;
bamFile fp;
int curr_tid, left_pos;
faidx_t *fai;
bcf_callaux_t *bca;
int ccol, last_pos, row_shift, base_for, color_for, is_dot, l_ref, ins, no_skip, show_name;
char *ref;
khash_t(kh_rg) *rg_hash;
/* callbacks */
void (*my_destroy)(struct AbstractTview* );
void (*my_mvprintw)(struct AbstractTview* ,int,int,const char*,...);
void (*my_mvaddch)(struct AbstractTview*,int,int,int);
void (*my_attron)(struct AbstractTview*,int);
void (*my_attroff)(struct AbstractTview*,int);
void (*my_clear)(struct AbstractTview*);
int (*my_colorpair)(struct AbstractTview*,int);
int (*my_drawaln)(struct AbstractTview*,int,int);
int (*my_loop)(struct AbstractTview*);
int (*my_underline)(struct AbstractTview*);
} tview_t;
char bam_aux_getCEi(bam1_t *b, int i);
char bam_aux_getCSi(bam1_t *b, int i);
char bam_aux_getCQi(bam1_t *b, int i);
#define TV_MIN_ALNROW 2
#define TV_MAX_GOTO 40
#define TV_LOW_MAPQ 10
#define TV_COLOR_MAPQ 0
#define TV_COLOR_BASEQ 1
#define TV_COLOR_NUCL 2
#define TV_COLOR_COL 3
#define TV_COLOR_COLQ 4
#define TV_BASE_NUCL 0
#define TV_BASE_COLOR_SPACE 1
int tv_pl_func(uint32_t tid, uint32_t pos, int n, const bam_pileup1_t *pl, void *data);
int base_tv_init(tview_t*,const char *fn, const char *fn_fa, const char *samples);
void base_tv_destroy(tview_t*);
int base_draw_aln(tview_t *tv, int tid, int pos);
typedef struct Tixel
{
int ch;
int attributes;
}tixel_t;
#endif
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