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Description: a couple of verbosity switches added to help with the
identification of a problem. This has now been resolved. This patch
should be removed in one fo the next versions.
Auuthor: Steffen Moeller <moeller@debian.org>
Index: python-seqcluster/seqcluster/create_report.py
===================================================================
--- python-seqcluster.orig/seqcluster/create_report.py
+++ python-seqcluster/seqcluster/create_report.py
@@ -30,6 +30,6 @@ def report(args):
logger.info("Creating profile (%s)" % profilesDir)
data = make_profile(data, profilesDir, args)
logger.info("Creating database")
- make_database(data, "seqcluster.db", args.out)
+ make_database(data, "seqcluster.db", args.out, True)
logger.info("Done. Download https://github.com/lpantano/seqclusterViz/archive/master.zip to browse the output.")
Index: python-seqcluster/seqcluster/db/__init__.py
===================================================================
--- python-seqcluster.orig/seqcluster/db/__init__.py
+++ python-seqcluster/seqcluster/db/__init__.py
@@ -107,9 +107,21 @@ def _close(con):
if con:
con.close()
-def make_database(data, name="seqcluster.db", out_dir="database"):
+def make_database(data, name="seqcluster.db", out_dir="database", verbose=False):
out_dir = safe_dirs(out_dir)
op.abspath(out_dir)
+
+ if verbose:
+ logger.info("make_database creates_db at %s" % op.join(out_dir, name))
+
con = _create_db(op.join(out_dir, name))
+
+ if verbose:
+ logger.info("make_database inserts data")
+
_insert_data(con, data)
+
+ if verbose:
+ logger.info("make_database closes connection")
+
_close(con)
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