1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
|
\name{summary}
\alias{summary}
\alias{summary,Axt-method}
\title{
Utility functions related to Axt alignment
}
\description{
A collection of different functions used to deal with \code{Axt} object.
}
\usage{
summary(object, ...) ## mismatch number and proportion
}
\arguments{
\item{object}{
An \code{Axt} object
}
\item{...}{
Currently not used.
}
}
\value{
A \code{table} object with the counts of mismatches, insertions, deletions
and the matches of each base.
}
\author{
Ge Tan
}
\examples{
axtFilesHg38DanRer10 <- file.path(system.file("extdata", package="CNEr"),
"hg38.danRer10.net.axt")
axtHg38DanRer10 <- readAxt(axtFilesHg38DanRer10)
summary(axtHg38DanRer10)
}
|
