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\name{readAncoraIntoSQLite}
\alias{readAncoraIntoSQLite}
\title{
Read Ancora legacy CNE format
}
\description{
Read Ancora legacy CNE format into a SQLite database.
}
\usage{
readAncoraIntoSQLite(cneFns, dbName, overwrite=FALSE)
}
\arguments{
\item{cneFns}{
\code{character}(n): filenames of Ancora CNE files.
}
\item{dbName}{
\code{character}(1): filename of SQLite database.
}
\item{overwrite}{
\code{boolean}(1): whether or not to overwrite the existing table.
}
}
\details{
The Ancora legacy CNE file has the filename in the format of
"cne2wBf_AstMex102_danRer10_48_50".
The first six columns are the coordinates of pairs of CNEs.
The start coordinate system is 0-based and is converted into 1-based when
it is imported into the SQLite database.
}
\value{
A \code{character} vector of table names.
}
\author{
Ge Tan
}
\note{
This function is mainly for internal use in Lenhard group.
}
\seealso{
\code{\link{readAncora}}
}
\examples{
ancoraCNEsFns <- file.path(system.file("extdata", package="CNEr"),
c("cne2wBf_cypCar1_danRer10_100_100",
"cne2wBf_cteIde1_danRer10_100_100",
"cne2wBf_AstMex102_danRer10_48_50"))
dbName <- tempfile()
readAncoraIntoSQLite(ancoraCNEsFns, dbName, overwrite=FALSE)
}
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