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% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/AllGenerics.R, R/methods.R
\docType{methods}
\name{dispersionFunction}
\alias{dispersionFunction}
\alias{dispersionFunction<-}
\alias{dispersionFunction,DESeqDataSet-method}
\alias{dispersionFunction<-,DESeqDataSet,function-method}
\title{Accessors for the 'dispersionFunction' slot of a DESeqDataSet object.}
\usage{
dispersionFunction(object, ...)
dispersionFunction(object, ...) <- value
\S4method{dispersionFunction}{DESeqDataSet}(object)
\S4method{dispersionFunction}{DESeqDataSet,`function`}(object, estimateVar = TRUE) <- value
}
\arguments{
\item{object}{a \code{DESeqDataSet} object.}
\item{...}{additional arguments}
\item{value}{a \code{function}}
\item{estimateVar}{whether to estimate the variance of dispersion residuals.
setting to FALSE is needed, e.g. within \code{estimateDispersionsMAP} when
called on a subset of the full dataset in parallel execution.}
}
\description{
The dispersion function is calculated by \code{\link{estimateDispersions}} and
used by \code{\link{varianceStabilizingTransformation}}. Parametric dispersion
fits store the coefficients of the fit as attributes in this slot.
}
\details{
Setting this will also overwrite \code{mcols(object)$dispFit} and the estimate
the variance of dispersion residuals, see \code{estimateVar} below.
}
\examples{
dds <- makeExampleDESeqDataSet(m=4)
dds <- estimateSizeFactors(dds)
dds <- estimateDispersions(dds)
dispersionFunction(dds)
}
\seealso{
\code{\link{estimateDispersions}}
}
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