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\name{SitePairSet}
\Rdversion{1.1}
\docType{class}
\alias{SitePairSet}
\alias{SitePairSet-class}
\alias{length,SitePairSet-method}
\alias{as.data.frame,SitePairSet-method}
\alias{site1,SitePairSet-method}
\alias{site2,SitePairSet-method}
\title{Class \code{"SitePairSet"}}
\description{
The SitePairSet object is a container for storing two SiteSet objects.
Usually it is used to hold the results returned by \link{searchAln}.
}
\usage{
## Constructor
SitePairSet(siteset1, siteset2)
}
\arguments{
\item{siteset1, siteset2}{
Each SiteSet object is from one sequence in the pairwise alignment.
}
}
\section{Methods}{
\describe{
\item{siteset1}{\code{signature(x = "SitePairSet")}: Gets the first SiteSet object.}
\item{siteset2}{\code{signature(x = "SitePairSet")}: Gets the second SiteSet object.}
}
}
\value{
A \code{\link{SitePairSet}} object.
}
\author{
Ge Tan
}
\seealso{
\code{\link{SitePairSet}},
\code{\link{searchAln}}
}
\keyword{classes}
|
