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\name{XMatrixList}
\Rdversion{1.1}
\docType{class}
\alias{XMatrixList}
\alias{XMatrixList,list-method}
\alias{PFMatrixList}
\alias{PFMatrixList-class}
\alias{PWMatrixList}
\alias{PWMatrixList-class}
\alias{ICMatrixList}
\alias{ICMatrixList-class}
\alias{bg,XMatrixList-method}
\alias{ID,XMatrixList-method}
\alias{Matrix,XMatrixList-method}
\alias{matrixClass,XMatrixList-method}
\alias{matrixType,XMatrixList-method}
\alias{name,XMatrixList-method}
\alias{strand,XMatrixList-method}
\alias{tags,XMatrixList-method}
\alias{showAsCell,XMatrixList-method}
\title{Class \code{"XMatrixList"}}
\description{
The XMatrixList virtual class is a container for storing a collection of XMatrix objects.
No object can be constructed directly from this virtual and it has three subclasses: PFMatrixList, PWMatrixList and ICMatrixList.
Basically it is a SimpleList and is designed for manipulating the set of XMatrix objects as a whole.
}
\usage{
## Constructors:
PFMatrixList(..., use.names=TRUE)
PWMatrixList(..., use.names=TRUE)
ICMatrixList(..., use.names=TRUE)
## Accessor-like methods:
\S4method{ID}{XMatrixList}(x)
\S4method{name}{XMatrixList}(x)
\S4method{bg}{XMatrixList}(x)
\S4method{tags}{XMatrixList}(x)
\S4method{name}{XMatrixList}(x)
\S4method{strand}{XMatrixList}(x)
}
\arguments{
\item{...}{
The \code{XMatrix} objects are supplied in ....
}
\item{use.names}{
A logical value. When TRUE, the names of the \code{XMatrix} will be kept.
}
\item{x}{
A \code{XMatrixList} object.
}
}
\value{
A \code{XMatrixList} object.
}
\author{
Ge Tan
}
\seealso{
\code{\link{XMatrix}},
}
\examples{
data(MA0003.2)
data(MA0004.1)
## Construction of PFMatrixList
pfmList <- PFMatrixList(pfm1=MA0003.2, pfm2=MA0004.1, use.names=TRUE)
## Construction of PFM<atrixList from list of PFMatrix
pfmList <- do.call(PFMatrixList, list(pfm1=MA0003.2, pfm2=MA0004.1))
}
\keyword{classes}
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