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\name{writeGFF3-methods}
\docType{methods}
\alias{writeGFF3}
\alias{writeGFF2}
\alias{writeGFF3-methods}
\alias{writeGFF2-methods}
\alias{writeGFF3,SitePairSet-method}
\alias{writeGFF2,SitePairSet-method}
\alias{writeGFF3,SitePairSetList-method}
\alias{writeGFF2,SitePairSetList-method}
\alias{writeGFF3,SiteSet-method}
\alias{writeGFF2,SiteSet-method}
\alias{writeGFF3,SiteSetList-method}
\alias{writeGFF2,SiteSetList-method}
\title{ \code{writeGFF3}, \code{writeGFF2} functions}
\description{
write the \code{SiteSet}, \code{SitePairSet}, \code{SiteSetList},
\code{SitePairSetList} into the GFF3 or GFF2 format.
}
\usage{
writeGFF3(x, scoreType=c("absolute", "relative"))
writeGFF2(x, scoreType=c("absolute", "relative"))
}
\arguments{
\item{x}{
A \code{SiteSet}, \code{SitePairSet}, \code{SiteSetList},
or \code{SitePairSetList} object.
}
\item{scoreType}{
The score column can have absolute value or relative value.
}
}
\value{
It returns nothing.
}
\author{
Ge Tan
}
\keyword{methods}
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