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if(NOT RDK_USE_BOOST_IOSTREAMS)
find_package(ZLIB)
set(STANDALONE_ZLIB_LIBRARY ${ZLIB_LIBRARIES})
include_directories(${ZLIB_INCLUDE_DIRS})
add_definitions("-DRDK_USE_STANDALONE_ZLIB")
endif(NOT RDK_USE_BOOST_IOSTREAMS)
if(RDK_BUILD_MAEPARSER_SUPPORT)
set(MAEPARSER_LIB maeparser)
set(maesupplier MaeMolSupplier.cpp MaeWriter.cpp)
if ("${RDK_MAEPARSER_LIBS}" STREQUAL "")
# if we're not building maeparser as part of the RDKit build), then find
# the imported package
find_package(ZLIB QUIET)
find_package(${MAEPARSER_LIB})
else()
# if we built maeparser as part of the RDKit build, then we need to use
# the headers from the source directory
include_directories(${maeparser_INCLUDE_DIRS})
endif()
endif()
if(RDK_BUILD_CHEMDRAW_SUPPORT)
add_definitions("-DRDK_BUILD_CHEMDRAW_SUPPORT")
endif()
rdkit_library(FileParsers
CDXMLParser.cpp
Mol2FileParser.cpp MolFileParser.cpp
SCSRMolFileParser.cpp
MolSGroupParsing.cpp MolSGroupWriting.cpp
MolFileStereochem.cpp MolFileWriter.cpp
ForwardSDMolSupplier.cpp SDMolSupplier.cpp SDWriter.cpp
SmilesMolSupplier.cpp
SmilesWriter.cpp
TDTMolSupplier.cpp
TDTWriter.cpp
TplFileParser.cpp TplFileWriter.cpp
PDBParser.cpp PDBWriter.cpp
CMLWriter.cpp XYZFileWriter.cpp XYZFileParser.cpp
${maesupplier}
ProximityBonds.cpp
SequenceParsers.cpp SequenceWriters.cpp
SVGParser.cpp PNGParser.cpp
MultithreadedMolSupplier.cpp
MultithreadedSmilesMolSupplier.cpp
MultithreadedSDMolSupplier.cpp
LINK_LIBRARIES GenericGroups Depictor SmilesParse ChemTransforms GraphMol SubstructMatch ${MAEPARSER_LIB} ${RDK_CHEMDRAW_LIBS} ${STANDALONE_ZLIB_LIBRARY}
)
if(STANDALONE_ZLIB_LIBRARY)
target_include_directories(FileParsers PRIVATE ${ZLIB_INCLUDE_DIRS})
endif(STANDALONE_ZLIB_LIBRARY)
target_compile_definitions(FileParsers PRIVATE RDKIT_FILEPARSERS_BUILD)
rdkit_headers(CDXMLParser.h
FileParsers.h
FileParserUtils.h
MolFileStereochem.h
FileWriters.h
MolSupplier.h MolSupplier.v1API.h
MolWriters.h
SequenceParsers.h SequenceWriters.h
GeneralFileReader.h
MultithreadedMolSupplier.h
MultithreadedSmilesMolSupplier.h
MultithreadedSDMolSupplier.h
PNGParser.h
DEST GraphMol/FileParsers)
rdkit_test(fileParsersTest1 test1.cpp
LINK_LIBRARIES CIPLabeler FileParsers SubstructMatch)
rdkit_test(testAtropisomers testAtropisomers.cpp
LINK_LIBRARIES FileParsers SubstructMatch)
rdkit_catch_test(testSquiggleDoubleBonds testSquiggleDoubleBonds.cpp
LINK_LIBRARIES FileParsers SubstructMatch)
rdkit_test(testMolSupplier testMolSupplier.cpp
LINK_LIBRARIES FileParsers RDStreams)
rdkit_test(testGeneralFileReader testGeneralFileReader.cpp
LINK_LIBRARIES FileParsers RDStreams)
if(RDK_TEST_MULTITHREADED)
rdkit_test(testMultithreadedMolSupplier testMultithreadedMolSupplier.cpp
LINK_LIBRARIES FileParsers Fingerprints RDStreams)
endif(RDK_TEST_MULTITHREADED)
rdkit_test(testMolWriter testMolWriter.cpp LINK_LIBRARIES CIPLabeler FileParsers)
rdkit_test(testTplParser testTpls.cpp LINK_LIBRARIES FileParsers GraphMol)
rdkit_test(testMol2ToMol testMol2ToMol.cpp LINK_LIBRARIES FileParsers)
rdkit_test(testSequence testSequence.cpp LINK_LIBRARIES FileParsers)
rdkit_test(testExtendedStereoParsing testExtendedStereoParsing.cpp
LINK_LIBRARIES FileParsers)
rdkit_catch_test(fileParsersCatchTest file_parsers_catch.cpp
LINK_LIBRARIES FileParsers)
rdkit_catch_test(macromolsCatchTest macromols_catch.cpp
LINK_LIBRARIES FileParsers)
rdkit_catch_test(testPropertyLists testPropertyLists.cpp
LINK_LIBRARIES FileParsers)
rdkit_catch_test(XYZFileParserCatchTest XYZFileParserCatchTest.cpp
LINK_LIBRARIES FileParsers)
rdkit_catch_test(cdxmlParserCatchTest cdxml_parser_catch.cpp
LINK_LIBRARIES FileParsers)
rdkit_catch_test(molfileStereoCatchTest molfile_stereo_catch.cpp
LINK_LIBRARIES FileParsers CIPLabeler Subgraphs)
rdkit_catch_test(connectTheDotsTest connectTheDots_catch.cpp
LINK_LIBRARIES FileParsers)
rdkit_catch_test(v2MolSuppliers v2_suppliers_catch.cpp
LINK_LIBRARIES FileParsers)
rdkit_catch_test(v2FileParsersCatchTest v2_file_parsers_catch.cpp
LINK_LIBRARIES FileParsers)
rdkit_catch_test(atropisomersCatch atropisomers_catch.cpp
LINK_LIBRARIES FileParsers)
if(RDK_TEST_MULTITHREADED AND RDK_BUILD_THREADSAFE_SSS)
rdkit_catch_test(multithreadedSupplierCatchTest multithreaded_supplier_catch.cpp
LINK_LIBRARIES FileParsers)
endif()
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