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roary 3.13.0%2Bdfsg-1
  • links: PTS, VCS
  • area: main
  • in suites: bookworm, bullseye
  • size: 3,944 kB
  • sloc: perl: 10,536; sh: 211; makefile: 9

Folder: Roary

d .. (parent)
d d rwxr-xr-x 4,096 CommandLine
d d rwxr-xr-x 146 External
d d rwxr-xr-x 4,096 Output
d d rwxr-xr-x 29 QC
- - rwxr-xr-x 2,378 AccessoryBinaryFasta.t
- - rwxr-xr-x 3,223 AccessoryClustering.t
- - rw-r--r-- 1,954 AnalyseGroups.t
- - rwxr-xr-x 2,903 AnnotateGroups.t
- - rw-r--r-- 4,562 AssemblyStatistics.t
- - rw-r--r-- 1,363 ChunkFastaFile.t
- - rw-r--r-- 951 CombinedProteome.t
- - rwxr-xr-x 2,322 ContigsToGeneIDsFromGFF.t
- - rw-r--r-- 2,323 EmblGroups.t
- - rwxr-xr-x 1,526 ExtractCoreGenesFromSpreadsheet.t
- - rwxr-xr-x 4,343 ExtractProteomeFromGFFs.t
- - rw-r--r-- 1,316 FilterFullClusters.t
- - rwxr-xr-x 1,991 GeneNamesFromGFF.t
- - rw-r--r-- 564 GroupLabels.t
- - rwxr-xr-x 2,887 GroupStatistics.t
- - rw-r--r-- 1,002 InflateClusters.t
- - rwxr-xr-x 5,803 OrderGenes.t
- - rw-r--r-- 752 ParallelAllAgainstAllBlast.t
- - rw-r--r-- 1,632 PrepareInputFiles.t
- - rw-r--r-- 3,035 PresenceAbsenceMatrix.t
- - rwxr-xr-x 3,514 ReformatInputGFFs.t
- - rw-r--r-- 1,020 ReorderSpreadsheet.t
- - rw-r--r-- 3,818 SampleOrder.t
- - rw-r--r-- 636 SequenceLengths.t
- - rwxr-xr-x 2,012 SortFasta.t
- - rw-r--r-- 2,285 SplitGroups.t
- - rwxr-xr-x 889 UniqueGenesPerSample.t