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#!/usr/bin/env perl
use strict;
use warnings;
use Test::Files;
use Data::Dumper;
BEGIN { unshift( @INC, './lib' ) }
$ENV{PATH} .= ":./bin";
BEGIN {
use Test::Most;
use_ok('Bio::Roary::UniqueGenesPerSample');
}
ok(
my $obj = Bio::Roary::UniqueGenesPerSample->new(
clustered_proteins => 't/data/unique_genes_per_sample/clustered_proteins_valid',
),
'Initialise object'
);
is_deeply($obj->_sample_to_gene_freq, {
'11111_4#44' => 1,
'123_4#5' => 2,
'999_4#5' => 1,
'22222_6#21' => 1
}, 'sample frequencies');
ok($obj->write_unique_frequency, 'create output file');
ok(-e $obj->output_filename, 'output file exists');
compare_ok($obj->output_filename, 't/data/unique_genes_per_sample/expected_unique_genes_per_sample.tsv', 'got expected unique gene frequency');
unlink($obj->output_filename);
done_testing();
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