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#ifndef __SINGLE_ALIGNMENT_FORMATTER_HPP__
#define __SINGLE_ALIGNMENT_FORMATTER_HPP__
#include "RapMapUtils.hpp"
template <typename IndexPtrT>
struct SingleAlignmentFormatter {
SingleAlignmentFormatter(IndexPtrT indexIn) : index(indexIn),
readTemp(1000, 'A'),
qualTemp(1000, '~'),
cigarStr(buff, 1000){
}
// Data members
IndexPtrT index;
std::string readTemp;
std::string qualTemp;
char buff[1000];
rapmap::utils::FixedWriter cigarStr;
};
#endif //__PAIR_ALIGNMENT_FORMATTER_HPP__
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