1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
|
// ==========================================================================
// SeqAn - The Library for Sequence Analysis
// ==========================================================================
// Copyright (c) 2006-2026, Knut Reinert, FU Berlin
// All rights reserved.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are met:
//
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
// * Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
// * Neither the name of Knut Reinert or the FU Berlin nor the names of
// its contributors may be used to endorse or promote products derived
// from this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
// ARE DISCLAIMED. IN NO EVENT SHALL KNUT REINERT OR THE FU BERLIN BE LIABLE
// FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
// DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
// SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
// CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
// LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
// OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
// DAMAGE.
//
// ==========================================================================
// Author: Enrico Siragusa <enrico.siragusa@fu-berlin.de>
// ==========================================================================
#include <vector>
#include <seqan/basic.h>
#include <seqan/index.h>
#include "test_index_helpers.h"
using namespace seqan2;
// ==========================================================================
// Test Classes
// ==========================================================================
// --------------------------------------------------------------------------
// Class IndexFinderTest
// --------------------------------------------------------------------------
template <typename TIndex_>
class IndexFinderTest : public IndexTest<TIndex_>
{
public:
typedef TIndex_ TIndex;
typedef IndexTest<TIndex> TBase;
typedef Finder<TIndex> TFinder;
TFinder finder;
IndexFinderTest() :
finder(TBase::index)
{}
};
SEQAN_TYPED_TEST_CASE(IndexFinderTest, UnidirectionalIndexTypes);
// --------------------------------------------------------------------------
// Test Finder
// --------------------------------------------------------------------------
SEQAN_TYPED_TEST(IndexFinderTest, FindFirstChar)
{
SEQAN_ASSERT(find(this->finder, prefix(concat(this->text), 1u)));
SEQAN_ASSERT(find(this->finder, "A"));
}
SEQAN_TYPED_TEST(IndexFinderTest, DefaultFinder)
{
typedef typename TestFixture::TIndex TIndex;
Finder<TIndex> finder;
find(finder, "needle");
}
SEQAN_TYPED_TEST(IndexFinderTest, StdString)
{
typedef Index<std::string, IndexSa<> > TIndex;
std::string str;
TIndex index(str);
Iterator<TIndex, TopDown<> >::Type iter(index);
}
SEQAN_TYPED_TEST(IndexFinderTest, StdVector)
{
typedef Index<std::vector<char>, IndexSa<> > TIndex;
std::vector<char> vec;
TIndex index(vec);
Iterator<TIndex, TopDown<> >::Type iter(index);
}
// ==========================================================================
// Functions
// ==========================================================================
int main(int argc, char const ** argv)
{
TestSystem::init(argc, argv);
return TestSystem::runAll();
}
|
