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import os
# This test file is adapted from this one:
# https://github.com/snakemake/snakemake/blob/758fabdb64255f8ca79e9c1483ceab67eb39ff07/tests/test_google_lifesciences/Snakefile
from snakemake.remote.GS import RemoteProvider as GSRemoteProvider
GS = GSRemoteProvider()
rule all:
input:
"landsat-data.txt.bz2"
checkpoint copy:
input:
GS.remote("gcp-public-data-landsat/LC08/01/001/003/LC08_L1GT_001003_20170430_20170501_01_RT/LC08_L1GT_001003_20170430_20170501_01_RT_MTL.txt")
output:
"landsat-data.txt"
resources:
mem_mb=100
run:
shell("cp {input} {output}")
def get_pack_input(wildcards):
output = checkpoints.copy.get().output[0]
return output
rule pack:
input:
get_pack_input
output:
"landsat-data.txt.bz2"
conda:
"env.yml"
log:
"logs/pack.log"
shell:
"bzip2 -c {input} > {output}; echo successful > {log}"
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