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|
rule all:
input: "test.out"
rule singularity_ok:
input:
"test_a.out",
"test_b.out",
"test_c.out"
output:
touch("test.out")
shell:
"""
test ! -f junk_a.out
test ! -f junk_b.out
test ! -f junk_c.out
"""
rule a:
output:
"test_a.out"
singularity:
"docker://bash"
shadow:
"minimal"
shell:
'echo 1 > junk_a.out; echo "test" > {output}'
rule b:
output:
"test_b.out"
shadow:
"minimal"
shell:
'echo 1 > junk_b.out; echo "test" > {output}'
rule c:
output:
"test_c.out"
shadow:
"minimal"
run:
with open(output[0], 'w') as fp:
print("test", file=fp)
with open('junk_c.out', 'w') as fp:
print("junk", file=fp)
|
