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from snakemake.utils import min_version
min_version("6.1.1")
configfile: "config.yaml"
remote_snakefile = "https://raw.githubusercontent.com/snakemake-workflows/dna-seq-varlociraptor/v1.0.0/workflow/Snakefile"
# import 1
module first:
snakefile:
remote_snakefile
replace_prefix:
{
"benchmarking/": "benchmarking/first/",
"logs/": "logs/first/",
"results/": "results/first/",
"resources/": "resources/first/",
}
config:
config
use rule * from first as first_*
rule all:
input:
rules.first_all.input
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