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from snakemake.utils import min_version
min_version("6.0")
configfile: "config.yaml"
remote_workflow_directory = "https://raw.githubusercontent.com/snakemake-workflows/dna-seq-varlociraptor/49e8479402e8094a6c0ade5f1ec6803cee255c79"
workflow_snakefile = f"{remote_workflow_directory}/workflow/Snakefile"
# basic
## use basic workflow
module basic:
snakefile:
workflow_snakefile
replace_prefix:
{
"benchmarking/": "benchmarking/basic/",
"logs/": "logs/basic/",
"results/": "results/basic/",
}
config:
config
use rule * from basic as basic_*
rule all:
input:
rules.basic_all.input
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