File: Snakefile_missing_rule

package info (click to toggle)
snakemake 7.32.4-8.1
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid
  • size: 25,836 kB
  • sloc: python: 32,846; javascript: 1,287; makefile: 247; sh: 163; ansic: 57; lisp: 9
file content (20 lines) | stat: -rw-r--r-- 390 bytes parent folder | download | duplicates (3) 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
 
from snakemake.utils import min_version
import os

min_version("6.1.1")

configfile: "config.yaml"

module_path = os.path.join(os.getcwd(), "repo/module")

module local_git_module:
    snakefile:
        gitfile(module_path, path="workflow/Snakefile", tag="e0.0.1")
    config:
        config

use rule * from local_git_module as local_git_module_*

rule all:
    input:
        "test.txt"