File: Snakefile

package info (click to toggle)
snakemake 7.32.4-8.1
  • links: PTS, VCS
  • area: main
  • in suites: sid
  • size: 25,836 kB
  • sloc: python: 32,846; javascript: 1,287; makefile: 247; sh: 163; ansic: 57; lisp: 9
file content (17 lines) | stat: -rw-r--r-- 271 bytes parent folder | download | duplicates (3) 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
 
configfile: "config.yaml"


module bwa_mapping:
    meta_wrapper: "0.72.0/meta/bio/bwa_mapping"


use rule * from bwa_mapping


def get_input(wildcards):
    return config["samples"][wildcards.sample]


use rule bwa_mem from bwa_mapping with:
    input:
        get_input