File: module.smk

package info (click to toggle)
snakemake 7.32.4-8.1
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid
  • size: 25,836 kB
  • sloc: python: 32,846; javascript: 1,287; makefile: 247; sh: 163; ansic: 57; lisp: 9
file content (29 lines) | stat: -rw-r--r-- 445 bytes parent folder | download | duplicates (5)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29


rule a:
    input:
        "test.txt"
    output:
        "test.out"
    singularity:
        "docker://bash"
    shell:
        'ls {input}; echo "test" > {output}'


rule b:
    output:
        "test.txt"
    singularity:
        "docker://python:3.8.3"
    script:
        "script.py"


rule c:
    output:
        "invalid.txt"
    singularity:
        "docker://invalid/image url even with whitespace"
    shell:
        "touch {output}"