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/*
* Copyright (c) Medical Research Council 2002. All rights reserved.
*
* Permission to use, copy, modify and distribute this software and its
* documentation for any purpose is hereby granted without fee, provided that
* this copyright and notice appears in all copies.
*
* This file was written as part of the Staden Package at the MRC Laboratory
* of Molecular Biology, Hills Road, Cambridge, CB2 2QH, United Kingdom.
*
* MRC disclaims all warranties with regard to this software.
*
*/
#include <mutscan_parameters.hpp>
//-------------
// Constructor
//-------------
MutScanParameters::MutScanParameters()
{
for( int n=0; n<MUTSCAN_PARAMETERS; n++ )
m_pParameter[n] = 0;
m_pParameter[MUTSCAN_PARAMETER_ALIGNFAIL_THRESHOLD] = new NumericParameter<double>( 15.0, 2.0, 100.0, "alignment failure threshold" );
m_pParameter[MUTSCAN_PARAMETER_COMPLEMENT_TAGS] = new NumericParameter<double>( -1.0, -2.0, 2.0, "complement strand reverse tags" );
m_pParameter[MUTSCAN_PARAMETER_HETSNR_THRESHOLD] = new NumericParameter<double>( 7.6, 1.0, 60.0, "heterozygote SNR threshold" );
m_pParameter[MUTSCAN_PARAMETER_PEAKDROP_LOWER] = new NumericParameter<double>( 0.2, 0.01, 1.0, "lower peak drop threshold" );
m_pParameter[MUTSCAN_PARAMETER_NOISE_THRESHOLD] = new NumericParameter<double>( 0.25, 0.01, 1.0, "noise threshold" );
m_pParameter[MUTSCAN_PARAMETER_PEAKDROP_UPPER] = new NumericParameter<double>( 0.7, 0.01, 1.0, "upper peak drop threshold" );
m_pParameter[MUTSCAN_PARAMETER_SEARCH_WINDOW] = new NumericParameter<double>( 0.9, 0.01, 1.5, "search window" );
}
//------------
// Destructor
//------------
MutScanParameters::~MutScanParameters()
{
for( int n=0; n<MUTSCAN_PARAMETERS; n++ )
delete m_pParameter[n];
}
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