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/*
* Copyright (c) Medical Research Council 2001. All rights reserved.
*
* Permission to use, copy, modify and distribute this software and its
* documentation for any purpose is hereby granted without fee, provided that
* this copyright and notice appears in all copies.
*
* This file was written as part of the Staden Package at the MRC Laboratory
* of Molecular Biology, Hills Road, Cambridge, CB2 2QH, United Kingdom.
*
* MRC disclaims all warranties with regard to this software.
*
*/
#include <cstdio> // For sprintf()
#include <validate.hpp>
#include <mutscan_parameters.hpp>
/*
Checks all the input data to ensure it's valid.
*/
mutlib_result_t MutScanValidateInput( mutscan_t* ms, MutScanParameters& p )
{
const mutlib_strand_t f = MUTLIB_STRAND_FORWARD;
const mutlib_strand_t r = MUTLIB_STRAND_REVERSE;
// Check initialisation flag
ms->ResultCode = MUTLIB_RESULT_INVALID_INPUT;
if( !ms->Initialised )
{
std::strcpy( ms->ResultString, "Uninitialised input structure.\n" );
return ms->ResultCode;
}
// Check parameters
for( int n=0; n<MUTSCAN_PARAMETERS; n++ )
{
if( p[n].IsValid() == false )
{
std::sprintf( ms->ResultString, "Invalid %s parameter %.2f. "
"Must be in the range %.2f-%.2f.\n",
p[n].Name(), p[n].Value(), p[n].Minimum(), p[n].Maximum() );
return ms->ResultCode;
}
}
// Check input trace
if( MutlibValidateTrace(ms->InputTrace,ms->ResultString,"input") )
return ms->ResultCode;
// Validate input trace clip points
if( MutlibValidateTraceClipPoints(ms->InputTrace,ms->ResultString,"input") )
return ms->ResultCode;
// Check forward reference trace
if( ms->InputTrace.Strand == MUTLIB_STRAND_FORWARD )
{
// Check trace
if( MutlibValidateTrace(ms->ReferenceTrace[f],ms->ResultString,"reference") )
return ms->ResultCode;
// Validate trace clip points
if( MutlibValidateTraceClipPoints(ms->ReferenceTrace[f],ms->ResultString,"reference") )
return ms->ResultCode;
}
// Check reverse reference trace
if( ms->InputTrace.Strand == MUTLIB_STRAND_REVERSE )
{
// Check trace
if( MutlibValidateTrace(ms->ReferenceTrace[r],ms->ResultString,"reference") )
return ms->ResultCode;
// Validate trace clip points
if( MutlibValidateTraceClipPoints(ms->ReferenceTrace[r],ms->ResultString, "reference") )
return ms->ResultCode;
}
// Success!
ms->ResultCode = MUTLIB_RESULT_SUCCESS;
return MUTLIB_RESULT_SUCCESS;
}
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