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/*
* Copyright (c) Medical Research Council 2001. All rights reserved.
*
* Permission to use, copy, modify and distribute this software and its
* documentation for any purpose is hereby granted without fee, provided that
* this copyright and notice appears in all copies.
*
* This file was written as part of the Staden Package at the MRC Laboratory
* of Molecular Biology, Hills Road, Cambridge, CB2 2QH, United Kingdom.
*
* MRC disclaims all warranties with regard to this software.
*
*/
#ifndef _TRACEALIGN_PREPROCESS_HPP_
#define _TRACEALIGN_PREPROCESS_HPP_
#include <trace.hpp> // For Trace object
#include <array.hpp> // For SimpleArray object
class TraceAlignPreprocessor
{
public:
// Constructor/Destructor
TraceAlignPreprocessor() { }
~TraceAlignPreprocessor() { }
public:
// Services
void Flush();
NumericArray<int>& Envelope() { return m_oEnvelope; }
double BaseIntervalMean() const { return m_nIntervalMean; }
int BaseIntervalMin() const { return m_nIntervalMin; }
int BaseIntervalMax() const { return m_nIntervalMax; }
int BaseIntervalMode() const { return m_nIntervalMode; }
double BaseIntervalStdDev() const { return m_nIntervalStdDev; }
void PreprocessTrace( Trace& t, bool bCacheBaseIntervalStatistics=false );
private:
// Data
int m_nIntervalMin;
int m_nIntervalMax;
int m_nIntervalMode;
double m_nIntervalMean;
double m_nIntervalStdDev;
NumericArray<int> m_oEnvelope; // Length = no of samples
};
#endif
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