1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
|
/*
* Copyright (c) Medical Research Council 2001. All rights reserved.
*
* Permission to use, copy, modify and distribute this software and its
* documentation for any purpose is hereby granted without fee, provided that
* this copyright and notice appears in all copies.
*
* This file was written as part of the Staden Package at the MRC Laboratory
* of Molecular Biology, Hills Road, Cambridge, CB2 2QH, United Kingdom.
*
* MRC disclaims all warranties with regard to this software.
*
*/
#include <cstdio> // For sprintf()
#include <validate.hpp>
/*
Checks all the input data to ensure it's valid.
*/
mutlib_result_t TraceAlignValidateInput( tracealign_t* ta )
{
const mutlib_strand_t f = MUTLIB_STRAND_FORWARD;
const mutlib_strand_t r = MUTLIB_STRAND_REVERSE;
// Check initialisation flag
ta->ResultCode = MUTLIB_RESULT_INVALID_INPUT;
if( !ta->Initialised )
{
std::sprintf( ta->ResultString, "Uninitialised input structure.\n" );
return ta->ResultCode;
}
// Check input trace
if( MutlibValidateTrace(ta->Input,ta->ResultString,"input") )
return ta->ResultCode;
// Validate input trace clip points
if( MutlibValidateTraceClipPoints(ta->Input,ta->ResultString,"input") )
return ta->ResultCode;
// Check forward reference trace
if( ta->Input.Strand == MUTLIB_STRAND_FORWARD )
{
// Check trace
if( MutlibValidateTrace(ta->Reference[f],ta->ResultString,"reference") )
return ta->ResultCode;
// Validate trace clip points
if( MutlibValidateTraceClipPoints(ta->Reference[f],ta->ResultString,"reference") )
return ta->ResultCode;
}
// Check reverse reference trace
if( ta->Input.Strand == MUTLIB_STRAND_REVERSE )
{
// Check trace
if( MutlibValidateTrace(ta->Reference[r],ta->ResultString,"reference") )
return ta->ResultCode;
// Validate trace clip points
if( MutlibValidateTraceClipPoints(ta->Reference[r],ta->ResultString, "reference") )
return ta->ResultCode;
}
// Success!
ta->ResultCode = MUTLIB_RESULT_SUCCESS;
return MUTLIB_RESULT_SUCCESS;
}
|
