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/*
* Copyright (c) Medical Research Council 2001. All rights reserved.
*
* Permission to use, copy, modify and distribute this software and its
* documentation for any purpose is hereby granted without fee, provided that
* this copyright and notice appears in all copies.
*
* This file was written as part of the Staden Package at the MRC Laboratory
* of Molecular Biology, Hills Road, Cambridge, CB2 2QH, United Kingdom.
*
* MRC disclaims all warranties with regard to this software.
*
*/
#include <tracediff_parameters.hpp>
//-------------
// Constructor
//-------------
TraceDiffParameters::TraceDiffParameters()
{
for( int n=0; n<TRACEDIFF_PARAMETERS; n++ )
m_pParameter[n] = 0;
m_pParameter[TRACEDIFF_PARAMETER_SENSITIVITY] = new NumericParameter<double>( 5.0, 1.0, 50.0, "sensitivity" );
m_pParameter[TRACEDIFF_PARAMETER_NOISE_THRESHOLD] = new NumericParameter<double>( 0.09, 0.01, 0.5, "noise threshold" );
m_pParameter[TRACEDIFF_PARAMETER_NOISE_WINDOW_LENGTH] = new NumericParameter<double>( 12.0, 2.0, 50.0, "noise window length" );
m_pParameter[TRACEDIFF_PARAMETER_PEAK_ALIGNMENT] = new NumericParameter<double>( 0.4, 0.01, 2.0, "peak alignment" );
m_pParameter[TRACEDIFF_PARAMETER_PEAK_WIDTH_MAXIMUM] = new NumericParameter<double>( 2.1, 1.0, 4.0, "maximum peak width" );
m_pParameter[TRACEDIFF_PARAMETER_COMPLEMENT_TAGS] = new NumericParameter<double>( -1.0, -2.0, 2.0, "complement reverse tags" );
m_pParameter[TRACEDIFF_PARAMETER_YSCALE] = new NumericParameter<double>( -1.0, -2.0, 2.0, "y-scale traces" );
}
//------------
// Destructor
//------------
TraceDiffParameters::~TraceDiffParameters()
{
for( int n=0; n<TRACEDIFF_PARAMETERS; n++ )
delete m_pParameter[n];
}
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