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trinityrnaseq 2.2.0%2Bdfsg-2
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  • area: main
  • in suites: stretch
  • size: 212,452 kB
  • ctags: 5,067
  • sloc: perl: 45,552; cpp: 19,678; java: 11,865; sh: 1,485; makefile: 613; ansic: 427; python: 313; xml: 83

Folder: DifferentialExpression

d .. (parent)
d d rwxr-xr-x 4,096 R
d d rwxr-xr-x 4,096 TissueEnrichment
d d rwxr-xr-x 4,096 cluster_sample_data
d d rwxr-xr-x 4,096 pairwise_summaries
- - rwxr-xr-x 1,044 DE_graph_to_dot.pl
- - rwxr-xr-x 84,211 PtR
- - rwxr-xr-x 875 ROKU.pl
- - rwxr-xr-x 1,717 add_annot_to_trans_id.pl
- - rwxr-xr-x 1,074 add_blastx_hit_to_trinity_id.pl
- - rwxr-xr-x 15,685 analyze_diff_expr.pl
- - rwxr-xr-x 1,022 assign_tissue_specific.pl
- - rwxr-xr-x 5,925 compare_gene_trans_DE_ranks.pl
- - rwxr-xr-x 3,731 cut_tree_into_clusters.pl
- - rwxr-xr-x 6,678 define_clusters_by_cutting_tree.pl
- - rwxr-xr-x 3,868 diff_expr_analysis_to_heatmap_html.pl
- - rwxr-xr-x 6,003 diff_express.cgi
- - rwxr-xr-x 3,289 downsample_count_matrix.pl
- - rwxr-xr-x 3,864 extract_GO_enriched_genes.pl
- - rwxr-xr-x 1,043 filter_diff_expr.pl
- - rwxr-xr-x 518 filter_matrix_min_sum_rowcounts.pl
- - rwxr-xr-x 1,861 get_tissue_enriched_DE_one_vs_all.pl
- - rwxr-xr-x 519 get_transcript_lengths.pl
- - rwxr-xr-x 6,464 identify_diff_isoform_splicing.pl
- - rwxr-xr-x 957 log2_transform_matrix.pl
- - rwxr-xr-x 1,068 log2_transform_median_center_fpkm_matrix.pl
- - rwxr-xr-x 2,957 matrix_to_gene_plots.pl
- - rwxr-xr-x 2,218 merge_matrices.pl
- - rwxr-xr-x 494 merge_subclusters.pl
- - rwxr-xr-x 3,095 plot_expression_patterns.pl
- - rwxr-xr-x 1,197 rank_roku_by_expr.pl
- - rwxr-xr-x 3,321 remove_batch_effects_from_count_matrix.pl
- - rwxr-xr-x 1,346 rename_matrix_column_labels.pl
- - rwxr-xr-x 1,282 rename_matrix_feature_identifiers.pl
- - rwxr-xr-x 4,586 replicates_to_sample_averages_matrix.pl
- - rwxr-xr-x 27,218 run_DE_analysis.pl
- - rwxr-xr-x 7,495 run_GOseq.pl
- - rwxr-xr-x 6,934 run_TMM_normalization_write_FPKM_matrix.pl
- - rwxr-xr-x 838 stratify_diff_expression.pl
- - rwxr-xr-x 537 subcluster_to_canvasXpress_html.make_index_html.pl
- - rwxr-xr-x 3,647 subcluster_to_canvasXpress_html.pl
- - rwxr-xr-x 1,430 summarize_diff_expr_across_min_threshold_ranges.pl