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trinityrnaseq 2.2.0%2Bdfsg-2
  • links: PTS, VCS
  • area: main
  • in suites: stretch
  • size: 212,452 kB
  • ctags: 5,067
  • sloc: perl: 45,552; cpp: 19,678; java: 11,865; sh: 1,485; makefile: 613; ansic: 427; python: 313; xml: 83

Folder: support_scripts

d .. (parent)
d d rwxr-xr-x 83 tests
- - rwxr-xr-x 636 GG_partitioned_trinity_aggregator.pl
- - rwxr-xr-x 2,050 SAM_coordSorted_fragment_Read_coverage_writer.pl
- - rwxr-xr-x 3,237 SAM_coordSorted_fragment_coverage_writer2.pl
- - rwxr-xr-x 817 SAM_extract_properly_mapped_pairs.pl
- - rwxr-xr-x 1,244 SAM_extract_uniquely_mapped_reads.pl
- - rwxr-xr-x 952 SAM_filter_out_unmapped_reads.pl
- - rwxr-xr-x 2,585 SAM_ordered_pair_jaccard.pl
- - rwxr-xr-x 2,164 SAM_set_transcribed_orient_info.pl
- - rwxr-xr-x 1,003 SAM_strand_separator.pl
- - rwxr-xr-x 8,262 SAM_to_frag_coords.pl
- - rwxr-xr-x 1,286 define_SAM_coverage_partitions2.pl
- - rwxr-xr-x 1,391 define_coverage_partitions.pl
- - rwxr-xr-x 4,824 eXpress_trans_to_gene_results.pl
- - rwxr-xr-x 7,042 extract_reads_per_partition.pl
- - rwxr-xr-x 3,062 fastQ_to_fastA.pl
- - rwxr-xr-x 2,476 fastQ_to_tab.pl
- - rwxr-xr-x 712 fasta_to_tab.pl
- - rwxr-xr-x 1,853 fragment_coverage_writer.pl
- - rwxr-xr-x 523 get_Trinity_gene_to_trans_map.pl
- - rwxr-xr-x 4,476 inchworm_transcript_splitter.pl
- - rwxr-xr-x 1,825 jaccard_fasta_clipper.pl
- - rwxr-xr-x 7,298 jaccard_wig_clipper.pl
- - rwxr-xr-x 704 join_partitions_within_range.pl
- - rwxr-xr-x 4,613 kallisto_trans_to_gene_results.pl
- - rwxr-xr-x 11,955 merge_left_right_nameSorted_SAMs.pl
- - rwxr-xr-x 3,912 nbkc_merge_left_right_stats.pl
- - rwxr-xr-x 1,739 nbkc_normalize.pl
- - rwxr-xr-x 18,797 ordered_fragment_coords_to_jaccard.pl
- - rwxr-xr-x 6,328 partition_chrysalis_graphs_n_reads.pl
- - rwxr-xr-x 847 partitioned_trinity_aggregator.pl
- - rw-r--r-- 411 plugin_install_tests.sh
- - rwxr-xr-x 5,115 prep_rnaseq_alignments_for_genome_assisted_assembly.pl
- - rwxr-xr-x 892 print_butterfly_assemblies.pl
- - rwxr-xr-x 1,644 process_GMAP_alignments_gff3_chimeras_ok.pl
- - rwxr-xr-x 571 revcomp_fasta.pl
- - rwxr-xr-x 5,077 run_TMM_scale_matrix.pl
- - rwxr-xr-x 2,563 run_UpperQuartileNormalization_matrix.pl
- - rwxr-xr-x 5,009 salmon_trans_to_gene_results.pl
- - rwxr-xr-x 5,103 scaffold_iworm_contigs.pl
- - rwxr-xr-x 2,969 segment_GFF_partitions.pl
- - rw-r--r-- 1,731 trinity_install_tests.sh
- - rwxr-xr-x 1,346 wig_clip_to_bed.pl
- - rwxr-xr-x 1,447 write_partitioned_trinity_cmds.pl