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qiime 1.4.0-2
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  • size: 29,704 kB
  • sloc: python: 77,837; haskell: 379; sh: 113; makefile: 103

Folder: tests

d .. (parent)
d d rwxr-xr-x 4,096 test_denoiser
d d rwxr-xr-x 66 test_parallel
d d rwxr-xr-x 146 test_pycogent_backports
d d rwxr-xr-x 132 test_support_files
- - rw-r--r-- 508 __init__.py
- - rwxr-xr-x 5,227 all_tests.py
- - rw-r--r-- 2,132 test_add_taxa.py
- - rwxr-xr-x 2,408 test_adjust_seq_orientation.py
- - rw-r--r-- 14,981 test_align_seqs.py
- - rw-r--r-- 5,454 test_alpha_diversity.py
- - rw-r--r-- 52,804 test_assign_taxonomy.py
- - rw-r--r-- 2,482 test_barcode.py
- - rw-r--r-- 9,986 test_beta_diversity.py
- - rw-r--r-- 6,421 test_beta_metrics.py
- - rwxr-xr-x 6,569 test_biplots.py
- - rwxr-xr-x 2,275 test_categorized_dist_scatterplot.py
- - rw-r--r-- 39,631 test_check_id_map.py
- - rw-r--r-- 1,132 test_cluster_quality.py
- - rw-r--r-- 1,002 test_collate_alpha.py
- - rw-r--r-- 13,255 test_colors.py
- - rwxr-xr-x 8,171 test_compare_alpha_diversities.py
- - rw-r--r-- 283,026 test_denoise_wrapper.py
- - rw-r--r-- 3,606 test_distance_matrix_from_mapping.py
- - rw-r--r-- 15,822 test_exclude_seqs_by_blast.py
- - rwxr-xr-x 14,635 test_filter.py
- - rwxr-xr-x 34,023 test_filter_alignment.py
- - rw-r--r-- 5,393 test_filter_by_metadata.py
- - rw-r--r-- 18,707 test_filter_otu_table.py
- - rw-r--r-- 2,506 test_filter_otus_by_sample.py
- - rw-r--r-- 18,791 test_format.py
- - rw-r--r-- 15,226 test_golay.py
- - rwxr-xr-x 18,555 test_group.py
- - rwxr-xr-x 3,872 test_hamming.py
- - rw-r--r-- 2,377 test_hierarchical_cluster.py
- - rwxr-xr-x 54,587 test_identify_chimeric_seqs.py
- - rw-r--r-- 3,217 test_longitudinal_otu_category_significance.py
- - rw-r--r-- 9,944 test_make_2d_plots.py
- - rw-r--r-- 61,025 test_make_3d_plots.py
- - rw-r--r-- 2,688 test_make_bootstrapped_tree.py
- - rw-r--r-- 38,614 test_make_distance_histograms.py
- - rw-r--r-- 6,121 test_make_fastq.py
- - rw-r--r-- 1,821 test_make_library_id_lists.py
- - rw-r--r-- 4,375 test_make_otu_heatmap.py
- - rw-r--r-- 5,841 test_make_otu_heatmap_html.py
- - rw-r--r-- 15,307 test_make_otu_network.py
- - rw-r--r-- 5,271 test_make_otu_table.py
- - rw-r--r-- 6,698 test_make_per_library_sff.py
- - rw-r--r-- 5,033 test_make_phylogeny.py
- - rwxr-xr-x 25,662 test_make_rarefaction_plots.py
- - rwxr-xr-x 3,829 test_merge_mapping_files.py
- - rwxr-xr-x 47,049 test_otu_category_significance.py
- - rw-r--r-- 43,805 test_parse.py
- - rw-r--r-- 132,862 test_pick_otus.py
- - rw-r--r-- 19,292 test_pick_rep_set.py
- - rwxr-xr-x 5,831 test_plot_rank_abundance_graph.py
- - rw-r--r-- 6,797 test_plot_semivariogram.py
- - rw-r--r-- 16,553 test_plot_taxa_summary.py
- - rw-r--r-- 37,236 test_pool_by_metadata.py
- - rw-r--r-- 820 test_principal_coordinates.py
- - rw-r--r-- 12,542 test_process_sff.py
- - rwxr-xr-x 13,120 test_quality_scores_plot.py
- - rw-r--r-- 3,764 test_rarefaction.py
- - rw-r--r-- 2,920 test_shared_phylotypes.py
- - rwxr-xr-x 52,706 test_simsam.py
- - rwxr-xr-x 11,561 test_sort.py
- - rw-r--r-- 64,367 test_split_libraries.py
- - rwxr-xr-x 45,075 test_split_libraries_fastq.py
- - rwxr-xr-x 41,487 test_split_libraries_illumina.py
- - rwxr-xr-x 15,320 test_submit_to_mgrast.py
- - rw-r--r-- 8,401 test_summarize_otu_by_cat.py
- - rw-r--r-- 5,677 test_summarize_taxa.py
- - rw-r--r-- 15,925 test_supervised_learning.py
- - rwxr-xr-x 12,597 test_transform_coordinate_matrices.py
- - rw-r--r-- 6,132 test_tree_compare.py
- - rw-r--r-- 4,258 test_trim_sff_primers.py
- - rwxr-xr-x 15,394 test_truncate_fasta_qual_files.py
- - rw-r--r-- 59,635 test_util.py
- - rwxr-xr-x 1,954,703 test_workflow.py