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d | rwxr-xr-x | 4,096 | Abi |
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d | rwxr-xr-x | 82 | Ace |
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d | rwxr-xr-x | 70 | Affy |
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d | rwxr-xr-x | 4,096 | Align |
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d | rwxr-xr-x | 120 | BWA |
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d | rwxr-xr-x | 115 | BioSQL |
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d | rwxr-xr-x | 8,192 | Blast |
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d | rwxr-xr-x | 4,096 | Blat |
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d | rwxr-xr-x | 30 | CDAO |
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d | rwxr-xr-x | 91 | Cellosaurus |
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d | rwxr-xr-x | 4,096 | Clustalw |
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d | rwxr-xr-x | 47 | Cluster |
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d | rwxr-xr-x | 45 | CodonUsage |
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d | rwxr-xr-x | 48 | Compass |
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d | rwxr-xr-x | 4,096 | EMBL |
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d | rwxr-xr-x | 4,096 | Emboss |
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d | rwxr-xr-x | 4,096 | Entrez |
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d | rwxr-xr-x | 101 | Enzymes |
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d | rwxr-xr-x | 4,096 | Exonerate |
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d | rwxr-xr-x | 34 | ExtendedPhylip |
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d | rwxr-xr-x | 30 | FSSP |
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d | rwxr-xr-x | 4,096 | Fasta |
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d | rwxr-xr-x | 129 | GFF |
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d | rwxr-xr-x | 35 | Gck |
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d | rwxr-xr-x | 4,096 | GenBank |
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d | rwxr-xr-x | 4,096 | Geo |
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d | rwxr-xr-x | 27 | Graphics |
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d | rwxr-xr-x | 4,096 | HHsuite |
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d | rwxr-xr-x | 4,096 | Hmmer |
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d | rwxr-xr-x | 93 | IntelliGenetics |
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d | rwxr-xr-x | 33 | InterProScan |
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d | rwxr-xr-x | 4,096 | KEGG |
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d | rwxr-xr-x | 4,096 | MAF |
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d | rwxr-xr-x | 4,096 | Mauve |
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d | rwxr-xr-x | 97 | Medline |
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d | rwxr-xr-x | 4,096 | MetaTool |
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d | rwxr-xr-x | 120 | NBRF |
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d | rwxr-xr-x | 55 | NMR |
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d | rwxr-xr-x | 4,096 | NeXML |
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d | rwxr-xr-x | 57 | NeuralNetwork |
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d | rwxr-xr-x | 4,096 | Nexus |
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d | rwxr-xr-x | 4,096 | Nib |
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d | rwxr-xr-x | 114 | PAML |
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d | rwxr-xr-x | 4,096 | PDB |
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d | rwxr-xr-x | 29 | PQR |
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d | rwxr-xr-x | 79 | Phd |
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d | rwxr-xr-x | 4,096 | Phylip |
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d | rwxr-xr-x | 4,096 | PhyloXML |
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d | rwxr-xr-x | 4,096 | PopGen |
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d | rwxr-xr-x | 156 | Prosite |
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d | rwxr-xr-x | 4,096 | Quality |
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d | rwxr-xr-x | 4,096 | Rebase |
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d | rwxr-xr-x | 69 | Registry |
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d | rwxr-xr-x | 4,096 | Roche |
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d | rwxr-xr-x | 4,096 | SCOP |
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d | rwxr-xr-x | 29 | Saf |
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d | rwxr-xr-x | 4,096 | SamBam |
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d | rwxr-xr-x | 4,096 | SeqXML |
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d | rwxr-xr-x | 104 | SnapGene |
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d | rwxr-xr-x | 4,096 | Stockholm |
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d | rwxr-xr-x | 4,096 | SubsMat |
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d | rwxr-xr-x | 4,096 | SwissProt |
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d | rwxr-xr-x | 4,096 | TreeConstruction |
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d | rwxr-xr-x | 132 | TwoBit |
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d | rwxr-xr-x | 83 | UniGene |
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d | rwxr-xr-x | 4,096 | UniProt |
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d | rwxr-xr-x | 84 | Wise |
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d | rwxr-xr-x | 82 | Xdna |
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d | rwxr-xr-x | 4,096 | codonalign |
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d | rwxr-xr-x | 4,096 | motifs |
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d | rwxr-xr-x | 54 | msf |
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d | rwxr-xr-x | 4,096 | phenotype |
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- | rw-r--r-- | 582 | .coveragerc |
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- | rw-r--r-- | 795 | biosql.ini.appveyor |
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- | rw-r--r-- | 706 | biosql.ini.sample |
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- | rw-r--r-- | 66,630 | common_BioSQL.py |
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- | rw-r--r-- | 4,445 | common_BioSQL_online.py |
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- | rwxr-xr-x | 27,413 | pairwise2_testCases.py |
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- | rw-r--r-- | 1,212 | requires_internet.py |
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- | rwxr-xr-x | 12,438 | run_tests.py |
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- | rw-r--r-- | 6,445 | search_tests_common.py |
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- | rw-r--r-- | 13,266 | seq_tests_common.py |
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- | rw-r--r-- | 121,943 | test_Ace.py |
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- | rw-r--r-- | 13,860 | test_Affy.py |
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- | rw-r--r-- | 64,492 | test_AlignIO.py |
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- | rw-r--r-- | 14,578 | test_AlignIO_ClustalIO.py |
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- | rw-r--r-- | 2,726 | test_AlignIO_EmbossIO.py |
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- | rw-r--r-- | 44,198 | test_AlignIO_FastaIO.py |
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- | rw-r--r-- | 5,255 | test_AlignIO_MauveIO.py |
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- | rw-r--r-- | 4,587 | test_AlignIO_PhylipIO.py |
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- | rw-r--r-- | 3,588 | test_AlignIO_convert.py |
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- | rw-r--r-- | 6,702 | test_AlignInfo.py |
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- | rw-r--r-- | 108,091 | test_Align_Alignment.py |
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- | rw-r--r-- | 34,094 | test_Align_a2m.py |
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- | rw-r--r-- | 100,837 | test_Align_bed.py |
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- | rw-r--r-- | 113,505 | test_Align_bigbed.py |
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- | rw-r--r-- | 522,496 | test_Align_bigmaf.py |
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- | rw-r--r-- | 205,139 | test_Align_bigpsl.py |
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- | rw-r--r-- | 41,366 | test_Align_clustal.py |
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- | rw-r--r-- | 112,882 | test_Align_emboss.py |
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- | rw-r--r-- | 202,267 | test_Align_exonerate.py |
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- | rw-r--r-- | 31,466 | test_Align_fasta.py |
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- | rw-r--r-- | 781,784 | test_Align_hhr.py |
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- | rw-r--r-- | 633,855 | test_Align_maf.py |
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- | rw-r--r-- | 27,897 | test_Align_mauve.py |
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- | rw-r--r-- | 16,375 | test_Align_msf.py |
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- | rw-r--r-- | 13,390 | test_Align_nexus.py |
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- | rw-r--r-- | 24,103 | test_Align_phylip.py |
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- | rw-r--r-- | 213,308 | test_Align_psl.py |
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- | rw-r--r-- | 146,676 | test_Align_sam.py |
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- | rw-r--r-- | 404,785 | test_Align_stockholm.py |
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- | rw-r--r-- | 1,240,434 | test_Align_tabular.py |
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- | rw-r--r-- | 4,281 | test_Application.py |
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- | rw-r--r-- | 7,807 | test_BWA_tool.py |
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- | rw-r--r-- | 784 | test_BioSQL_MySQLdb.py |
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- | rw-r--r-- | 997 | test_BioSQL_MySQLdb_online.py |
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- | rw-r--r-- | 802 | test_BioSQL_mysql_connector.py |
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- | rw-r--r-- | 1,005 | test_BioSQL_mysql_connector_online.py |
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- | rw-r--r-- | 779 | test_BioSQL_psycopg2.py |
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- | rw-r--r-- | 999 | test_BioSQL_psycopg2_online.py |
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- | rw-r--r-- | 2,596 | test_BioSQL_sqlite3.py |
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- | rw-r--r-- | 1,067 | test_BioSQL_sqlite3_online.py |
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- | rw-r--r-- | 1,062 | test_Blast_Record.py |
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- | rw-r--r-- | 3,658 | test_CAPS.py |
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- | rw-r--r-- | 1,159 | test_Chi2.py |
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- | rw-r--r-- | 8,237 | test_ClustalOmega_tool.py |
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- | rw-r--r-- | 11,905 | test_Clustalw_tool.py |
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- | rw-r--r-- | 111,163 | test_Cluster.py |
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- | rw-r--r-- | 35,128 | test_CodonTable.py |
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- | rw-r--r-- | 4,215 | test_ColorSpiral.py |
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- | rw-r--r-- | 4,002 | test_Compass.py |
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- | rw-r--r-- | 7,061 | test_Consensus.py |
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- | rw-r--r-- | 4,721 | test_Dialign_tool.py |
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- | rw-r--r-- | 3,074 | test_EMBL_unittest.py |
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- | rw-r--r-- | 37,714 | test_Emboss.py |
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- | rw-r--r-- | 12,860 | test_EmbossPhylipNew.py |
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- | rw-r--r-- | 9,286 | test_EmbossPrimer.py |
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- | rw-r--r-- | 15,969 | test_Entrez.py |
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- | rw-r--r-- | 10,361 | test_Entrez_online.py |
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- | rw-r--r-- | 596,403 | test_Entrez_parser.py |
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- | rw-r--r-- | 6,332 | test_Enzyme.py |
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- | rw-r--r-- | 1,786 | test_ExPASy.py |
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- | rw-r--r-- | 5,881 | test_Fasttree_tool.py |
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- | rw-r--r-- | 4,109 | test_File.py |
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- | rw-r--r-- | 376,551 | test_GenBank.py |
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- | rw-r--r-- | 46,909 | test_GenomeDiagram.py |
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- | rw-r--r-- | 4,224 | test_GraphicsBitmaps.py |
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- | rw-r--r-- | 38,691 | test_GraphicsChromosome.py |
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- | rw-r--r-- | 2,676 | test_GraphicsDistribution.py |
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- | rw-r--r-- | 2,594 | test_GraphicsGeneral.py |
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- | rw-r--r-- | 4,787 | test_HMMCasino.py |
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- | rw-r--r-- | 15,574 | test_HMMGeneral.py |
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- | rw-r--r-- | 8,236 | test_KEGG.py |
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- | rw-r--r-- | 10,542 | test_KEGG_online.py |
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- | rw-r--r-- | 7,977 | test_KGML_graphics.py |
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- | rw-r--r-- | 2,761 | test_KGML_graphics_online.py |
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- | rw-r--r-- | 4,940 | test_KGML_nographics.py |
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- | rw-r--r-- | 5,891 | test_KeyWList.py |
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- | rw-r--r-- | 4,213 | test_LogisticRegression.py |
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- | rw-r--r-- | 5,694 | test_MSAProbs_tool.py |
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- | rw-r--r-- | 32,338 | test_MafIO_index.py |
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- | rw-r--r-- | 7,523 | test_Mafft_tool.py |
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- | rw-r--r-- | 22,760 | test_MarkovModel.py |
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- | rw-r--r-- | 20,479 | test_Medline.py |
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- | rw-r--r-- | 18,125 | test_Muscle_tool.py |
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- | rw-r--r-- | 1,352,699 | test_NCBITextParser.py |
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- | rw-r--r-- | 180,421 | test_NCBIXML.py |
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- | rw-r--r-- | 16,882 | test_NCBI_BLAST_tools.py |
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- | rw-r--r-- | 16,463 | test_NCBI_qblast.py |
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- | rw-r--r-- | 5,068 | test_NMR.py |
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- | rw-r--r-- | 4,108 | test_NaiveBayes.py |
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- | rw-r--r-- | 42,549 | test_Nexus.py |
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- | rw-r--r-- | 12,294 | test_PAML_baseml.py |
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- | rw-r--r-- | 26,830 | test_PAML_codeml.py |
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- | rw-r--r-- | 4,845 | test_PAML_tools.py |
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- | rw-r--r-- | 7,208 | test_PAML_yn00.py |
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- | rw-r--r-- | 7,919 | test_PDBList.py |
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- | rw-r--r-- | 3,099 | test_PDB_CEAligner.py |
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- | rw-r--r-- | 10,895 | test_PDB_DSSP.py |
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- | rw-r--r-- | 2,184 | test_PDB_Dice.py |
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- | rw-r--r-- | 7,531 | test_PDB_Disordered.py |
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- | rw-r--r-- | 5,310 | test_PDB_Exposure.py |
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- | rw-r--r-- | 1,322 | test_PDB_FragmentMapper.py |
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- | rw-r--r-- | 7,776 | test_PDB_KDTree.py |
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- | rw-r--r-- | 16,945 | test_PDB_MMCIF2Dict.py |
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- | rw-r--r-- | 7,990 | test_PDB_MMCIFIO.py |
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- | rw-r--r-- | 16,204 | test_PDB_MMCIFParser.py |
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- | rw-r--r-- | 2,420 | test_PDB_NACCESS.py |
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- | rw-r--r-- | 13,526 | test_PDB_PDBIO.py |
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- | rw-r--r-- | 29,506 | test_PDB_PDBParser.py |
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- | rw-r--r-- | 3,487 | test_PDB_PSEA.py |
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- | rw-r--r-- | 6,776 | test_PDB_Polypeptide.py |
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- | rw-r--r-- | 4,518 | test_PDB_QCSuperimposer.py |
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- | rw-r--r-- | 4,513 | test_PDB_ResidueDepth.py |
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- | rw-r--r-- | 5,587 | test_PDB_SASA.py |
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- | rw-r--r-- | 18,436 | test_PDB_SMCRA.py |
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- | rw-r--r-- | 5,947 | test_PDB_Selection.py |
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- | rw-r--r-- | 2,102 | test_PDB_StructureAlignment.py |
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- | rw-r--r-- | 6,477 | test_PDB_Superimposer.py |
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- | rw-r--r-- | 22,145 | test_PDB_internal_coords.py |
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- | rw-r--r-- | 7,649 | test_PDB_parse_pdb_header.py |
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- | rw-r--r-- | 11,452 | test_PDB_vectors.py |
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- | rw-r--r-- | 7,230 | test_PQR.py |
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- | rw-r--r-- | 8,512 | test_Pathway.py |
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- | rw-r--r-- | 20,470 | test_Phd.py |
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- | rw-r--r-- | 21,149 | test_Phylo.py |
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- | rw-r--r-- | 30,123 | test_PhyloXML.py |
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- | rw-r--r-- | 3,297 | test_Phylo_CDAO.py |
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- | rw-r--r-- | 3,251 | test_Phylo_NeXML.py |
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- | rw-r--r-- | 3,632 | test_Phylo_matplotlib.py |
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- | rw-r--r-- | 1,180 | test_Phylo_networkx.py |
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- | rw-r--r-- | 3,715 | test_PopGen_GenePop.py |
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- | rw-r--r-- | 4,252 | test_PopGen_GenePop_EasyController.py |
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- | rw-r--r-- | 7,419 | test_PopGen_GenePop_nodepend.py |
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- | rw-r--r-- | 8,351 | test_Prank_tool.py |
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- | rw-r--r-- | 3,900 | test_Probcons_tool.py |
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- | rw-r--r-- | 12,860 | test_ProtParam.py |
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- | rw-r--r-- | 2,534 | test_RCSBFormats.py |
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- | rw-r--r-- | 24,049 | test_Restriction.py |
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- | rw-r--r-- | 2,245 | test_SCOP_Astral.py |
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- | rw-r--r-- | 3,408 | test_SCOP_Cla.py |
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- | rw-r--r-- | 1,874 | test_SCOP_Des.py |
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- | rw-r--r-- | 1,763 | test_SCOP_Dom.py |
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- | rw-r--r-- | 1,318 | test_SCOP_Hie.py |
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- | rw-r--r-- | 4,199 | test_SCOP_Raf.py |
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- | rw-r--r-- | 2,353 | test_SCOP_Residues.py |
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- | rw-r--r-- | 5,384 | test_SCOP_Scop.py |
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- | rw-r--r-- | 637 | test_SCOP_online.py |
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- | rw-r--r-- | 4,235 | test_SVDSuperimposer.py |
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- | rw-r--r-- | 40,380 | test_SearchIO_blast_tab.py |
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- | rw-r--r-- | 9,702 | test_SearchIO_blast_tab_index.py |
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- | rw-r--r-- | 111,496 | test_SearchIO_blast_text.py |
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- | rw-r--r-- | 172,990 | test_SearchIO_blast_xml.py |
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- | rw-r--r-- | 38,090 | test_SearchIO_blast_xml_index.py |
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- | rw-r--r-- | 60,569 | test_SearchIO_blat_psl.py |
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- | rw-r--r-- | 2,610 | test_SearchIO_blat_psl_index.py |
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- | rw-r--r-- | 111,003 | test_SearchIO_exonerate.py |
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- | rw-r--r-- | 956 | test_SearchIO_exonerate_text_index.py |
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- | rw-r--r-- | 969 | test_SearchIO_exonerate_vulgar_index.py |
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- | rw-r--r-- | 139,532 | test_SearchIO_fasta_m10.py |
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- | rw-r--r-- | 2,174 | test_SearchIO_fasta_m10_index.py |
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- | rw-r--r-- | 21,781 | test_SearchIO_hhsuite2_text.py |
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- | rw-r--r-- | 22,864 | test_SearchIO_hmmer2_text.py |
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- | rw-r--r-- | 23,781 | test_SearchIO_hmmer2_text_index.py |
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- | rw-r--r-- | 27,802 | test_SearchIO_hmmer3_domtab.py |
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- | rw-r--r-- | 5,460 | test_SearchIO_hmmer3_domtab_index.py |
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- | rw-r--r-- | 20,421 | test_SearchIO_hmmer3_tab.py |
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- | rw-r--r-- | 4,505 | test_SearchIO_hmmer3_tab_index.py |
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- | rw-r--r-- | 117,045 | test_SearchIO_hmmer3_text.py |
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- | rw-r--r-- | 18,772 | test_SearchIO_hmmer3_text_index.py |
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- | rw-r--r-- | 2,745 | test_SearchIO_interproscan_xml.py |
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- | rw-r--r-- | 6,339 | test_SearchIO_legacy.py |
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- | rw-r--r-- | 67,718 | test_SearchIO_model.py |
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- | rw-r--r-- | 9,444 | test_SearchIO_write.py |
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- | rw-r--r-- | 13,764 | test_SeqFeature.py |
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- | rw-r--r-- | 230,581 | test_SeqIO.py |
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- | rw-r--r-- | 577,977 | test_SeqIO_AbiIO.py |
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- | rw-r--r-- | 9,699 | test_SeqIO_FastaIO.py |
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- | rw-r--r-- | 3,651 | test_SeqIO_Gck.py |
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- | rw-r--r-- | 4,504 | test_SeqIO_Insdc.py |
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- | rw-r--r-- | 2,128 | test_SeqIO_NibIO.py |
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- | rw-r--r-- | 7,579 | test_SeqIO_PdbIO.py |
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- | rw-r--r-- | 43,503 | test_SeqIO_QualityIO.py |
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- | rw-r--r-- | 9,447 | test_SeqIO_SeqXML.py |
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- | rw-r--r-- | 11,986 | test_SeqIO_SnapGene.py |
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- | rw-r--r-- | 22,119 | test_SeqIO_TwoBitIO.py |
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- | rw-r--r-- | 8,322 | test_SeqIO_Xdna.py |
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- | rw-r--r-- | 55,956 | test_SeqIO_features.py |
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- | rw-r--r-- | 30,021 | test_SeqIO_index.py |
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- | rw-r--r-- | 3,528 | test_SeqIO_online.py |
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- | rw-r--r-- | 10,707 | test_SeqIO_write.py |
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- | rw-r--r-- | 23,331 | test_SeqRecord.py |
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- | rw-r--r-- | 27,128 | test_SeqUtils.py |
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- | rw-r--r-- | 95,293 | test_Seq_objs.py |
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- | rw-r--r-- | 21,731 | test_SffIO.py |
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- | rw-r--r-- | 341,374 | test_SwissProt.py |
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- | rw-r--r-- | 6,990 | test_TCoffee_tool.py |
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- | rw-r--r-- | 21,929 | test_TogoWS.py |
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- | rw-r--r-- | 13,132 | test_TreeConstruction.py |
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- | rw-r--r-- | 9,540 | test_Tutorial.py |
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- | rw-r--r-- | 74,992 | test_UniGene.py |
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- | rw-r--r-- | 7,681 | test_UniProt_GOA.py |
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- | rw-r--r-- | 26,618 | test_Uniprot.py |
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- | rw-r--r-- | 7,763 | test_Wise.py |
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- | rw-r--r-- | 6,116 | test_XXmotif_tool.py |
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- | rw-r--r-- | 28,572 | test_align.py |
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- | rw-r--r-- | 141,291 | test_align_substitution_matrices.py |
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- | rw-r--r-- | 18,281 | test_bgzf.py |
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- | rw-r--r-- | 7,009 | test_cellosaurus.py |
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- | rw-r--r-- | 17,320 | test_codonalign.py |
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- | rw-r--r-- | 289,276 | test_geo.py |
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- | rw-r--r-- | 3,468 | test_kNN.py |
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- | rw-r--r-- | 10,422 | test_mmtf.py |
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- | rw-r--r-- | 1,078 | test_mmtf_online.py |
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- | rw-r--r-- | 138,431 | test_motifs.py |
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- | rw-r--r-- | 1,708 | test_motifs_online.py |
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- | rw-r--r-- | 844 | test_pairwise2.py |
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- | rw-r--r-- | 1,151 | test_pairwise2_no_C.py |
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- | rw-r--r-- | 174,749 | test_pairwise_aligner.py |
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- | rw-r--r-- | 30,452 | test_pairwise_alignment_map.py |
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- | rw-r--r-- | 13,152 | test_phenotype.py |
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- | rw-r--r-- | 2,480 | test_phenotype_fit.py |
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- | rw-r--r-- | 2,669 | test_phyml_tool.py |
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- | rw-r--r-- | 57,974 | test_prodoc.py |
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- | rw-r--r-- | 251,003 | test_prosite.py |
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- | rw-r--r-- | 2,285 | test_raxml_tool.py |
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- | rw-r--r-- | 10,692 | test_samtools_tool.py |
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- | rw-r--r-- | 57,862 | test_seq.py |
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- | rw-r--r-- | 3,287 | test_translate.py |