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snpeff 5.2.f%2Bdfsg-1
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 701,384 kB
  • sloc: java: 62,547; perl: 2,279; sh: 1,185; python: 744; xml: 507; makefile: 50

Folder: _OLD

d .. (parent)
- - rwxr-xr-x 862 1kg.sh
- - rwxr-xr-x 3,022 annotate_demo.sh
- - rwxr-xr-x 1,693 annotate_demo_GATK.sh
- - rwxr-xr-x 1,099 bedEffOnePerLine.pl
- - rwxr-xr-x 1,217 cgShore.pl
- - rwxr-xr-x 254 cgShore.sh
- - rwxr-xr-x 141 countColumns.py
- - rwxr-xr-x 750 db.pl
- - rwxr-xr-x 815 extractSequences.pl
- - rwxr-xr-x 808 fasta2tab.pl
- - rwxr-xr-x 797 fastaSample.pl
- - rwxr-xr-x 1,158 fastaSplit.pl
- - rwxr-xr-x 1,982 fastqSplit.pl
- - rwxr-xr-x 987 filterBy.py
- - rwxr-xr-x 227 gffRemovePhase.pl
- - rwxr-xr-x 565 isutf8.py
- - rwxr-xr-x 1,472 join.pl
- - rwxr-xr-x 3,482 joinSnpEff.pl
- - rwxr-xr-x 200 make_and_commit_docs.sh
- - rwxr-xr-x 2,172 nextProt_filter.pl
- - rwxr-xr-x 2,074 ped2vcf.py
- - rwxr-xr-x 1,757 plot.pl
- - rwxr-xr-x 2,279 plotHistogram.pl
- - rwxr-xr-x 2,106 plotLabel.pl
- - rwxr-xr-x 1,753 plotMA.pl
- - rwxr-xr-x 2,247 plotQQ.pl
- - rwxr-xr-x 3,237 plotQQsubsample.pl
- - rwxr-xr-x 2,143 plotSmoothScatter.pl
- - rwxr-xr-x 1,931 plotXY.pl
- - rwxr-xr-x 4,084 queue.pl
- - rwxr-xr-x 342 sam2fastq.pl
- - rwxr-xr-x 261 sample.pl
- - rwxr-xr-x 1,385 snpSift_filter_sample_to_number.pl
- - rwxr-xr-x 193 sortLine.py
- - rwxr-xr-x 916 splitChr.pl
- - rwxr-xr-x 405 statsNum.pl
- - rwxr-xr-x 744 swapCols.pl
- - rwxr-xr-x 526 transpose.pl
- - rwxr-xr-x 75 txt2fa.pl
- - rwxr-xr-x 2,286 txt2vcf.py
- - rwxr-xr-x 198 uniqCount.pl
- - rwxr-xr-x 2,322 uniqCut.pl
- - rwxr-xr-x 979 vcfAnnFirst.py
- - rwxr-xr-x 717 vcfBareBones.pl
- - rwxr-xr-x 1,973 vcfEffHighest.ORI.py
- - rwxr-xr-x 1,614 vcfEffOnePerLine.pl
- - rwxr-xr-x 2,389 vcfFilterSamples.pl
- - rwxr-xr-x 621 vcfInfoOnePerLine.pl
- - rwxr-xr-x 241 vcfOnlyAlts.pl
- - rwxr-xr-x 257 vcfReduceGenotypes.pl
- - rwxr-xr-x 1,895 vcfRefCorrect.py
- - rwxr-xr-x 657 wigSplit.pl