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python-deeptools 3.5.6%2Bdfsg-1
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  • area: main
  • in suites: forky, sid, trixie
  • size: 34,456 kB
  • sloc: python: 14,503; xml: 4,212; sh: 33; makefile: 5

Folder: deeptools

d .. (parent)
d d rwxr-xr-x 4,096 test
- - rw-r--r-- 7,004 SES_scaleFactor.py
- - rw-r--r-- 0 __init__.py
- - rw-r--r-- 18,213 alignmentSieve.py
- - rw-r--r-- 14,287 bamCompare.py
- - rw-r--r-- 18,614 bamCoverage.py
- - rw-r--r-- 3,345 bamHandler.py
- - rwxr-xr-x 21,244 bamPEFragmentSize.py
- - rw-r--r-- 4,905 bigwigAverage.py
- - rw-r--r-- 6,611 bigwigCompare.py
- - rw-r--r-- 44,835 cm.py
- - rwxr-xr-x 31,003 computeGCBias.py
- - rw-r--r-- 22,443 computeMatrix.py
- - rwxr-xr-x 32,107 computeMatrixOperations.py
- - rwxr-xr-x 26,155 correctGCBias.py
- - rwxr-xr-x 28,078 correlation.py
- - rw-r--r-- 3,796 correlation_heatmap.py
- - rw-r--r-- 42,159 countReadsPerBin.py
- - rw-r--r-- 3,346 deeptools_list_tools.py
- - rw-r--r-- 16,603 estimateReadFiltering.py
- - rw-r--r-- 4,779 estimateScaleFactor.py
- - rw-r--r-- 7,011 getFragmentAndReadSize.py
- - rw-r--r-- 2,326 getRatio.py
- - rw-r--r-- 12,769 getScaleFactor.py
- - rw-r--r-- 11,967 getScorePerBigWigBin.py
- - rw-r--r-- 58,987 heatmapper.py
- - rw-r--r-- 7,169 heatmapper_utilities.py
- - rw-r--r-- 9,786 mapReduce.py
- - rw-r--r-- 597 misc.py
- - rw-r--r-- 11,896 multiBamSummary.py
- - rw-r--r-- 11,288 multiBigwigSummary.py
- - rwxr-xr-x 43,744 parserCommon.py
- - rw-r--r-- 10,981 plotCorrelation.py
- - rwxr-xr-x 16,326 plotCoverage.py
- - rwxr-xr-x 25,241 plotEnrichment.py
- - rwxr-xr-x 19,873 plotFingerprint.py
- - rwxr-xr-x 37,141 plotHeatmap.py
- - rw-r--r-- 9,424 plotPCA.py
- - rwxr-xr-x 39,221 plotProfile.py
- - rw-r--r-- 9,899 sumCoveragePerBin.py
- - rwxr-xr-x 14,161 utilities.py
- - rw-r--r-- 13,223 writeBedGraph.py
- - rw-r--r-- 9,252 writeBedGraph_bam_and_bw.py