| Patch |
File delta |
Description |
| external spdlog.patch | (download) |
src/CMakeLists.txt |
2 0 + 2 - 0 !
src/consensus/CMakeLists.txt |
2 1 + 1 - 0 !
src/filter/CMakeLists.txt |
2 1 + 1 - 0 !
src/layout/CMakeLists.txt |
2 1 + 1 - 0 !
src/maximal/CMakeLists.txt |
2 1 + 1 - 0 !
5 files changed, 4 insertions(+), 6 deletions(-) |
exclude build directory for spdlog
remove subdir declaration from src/CMakeLists.txt and:
sed -i s/spdlog// src/{consensus,layout,filter,maximal}/CMakeLists.txt
|
| libspdlog 14.0.patch | (download) |
src/consensus/draft.cpp |
2 1 + 1 - 0 !
src/consensus/draft_chopper.cpp |
3 1 + 2 - 0 !
src/consensus/io_base.cpp |
2 1 + 1 - 0 !
src/filter/filter.cpp |
2 1 + 1 - 0 !
src/layout/hinging.cpp |
2 1 + 1 - 0 !
src/maximal/maximal.cpp |
2 1 + 1 - 0 !
6 files changed, 6 insertions(+), 7 deletions(-) |
update to new spdlog interface
Debian-Bug: https://bugs.debian.org/884211
|
| libspdlog 1:1.3.0 | (download) |
src/consensus/draft.cpp |
2 2 + 0 - 0 !
src/filter/filter.cpp |
2 2 + 0 - 0 !
src/layout/hinging.cpp |
2 2 + 0 - 0 !
src/maximal/maximal.cpp |
2 2 + 0 - 0 !
4 files changed, 8 insertions(+) |
spdlog 1.3.0 compat
|
| 2to3.patch | (download) |
README.md |
6 3 + 3 - 0 !
scripts/Visualise_graph.py |
6 3 + 3 - 0 !
scripts/add_groundtruth.py |
8 4 + 4 - 0 !
scripts/add_groundtruth_json.py |
4 2 + 2 - 0 !
scripts/clip_ends.py |
4 2 + 2 - 0 !
scripts/compute_n50_from_draft.py |
6 3 + 3 - 0 !
scripts/condense_graph.py |
32 16 + 16 - 0 !
scripts/condense_graph_and_annotate.py |
38 19 + 19 - 0 !
scripts/condense_graph_annotate_clip_ends.py |
46 23 + 23 - 0 !
scripts/condense_graph_create_gfa_compute_n50.py |
40 20 + 20 - 0 !
scripts/condense_graph_with_gt.py |
34 17 + 17 - 0 !
scripts/connected.py |
22 11 + 11 - 0 !
scripts/correct_head.py |
2 1 + 1 - 0 !
scripts/create_bandage_file.py |
2 1 + 1 - 0 !
scripts/create_hgraph.py |
6 3 + 3 - 0 !
scripts/create_hgraph_nogt.py |
6 3 + 3 - 0 !
scripts/download_NCTC_pipeline.py |
12 6 + 6 - 0 !
scripts/draft_assembly.py |
8 4 + 4 - 0 !
scripts/draft_assembly_not_perfect.py |
8 4 + 4 - 0 !
scripts/draw2.py |
10 5 + 5 - 0 !
scripts/draw2_pileup.py |
8 4 + 4 - 0 !
scripts/draw2_pileup_region.py |
10 5 + 5 - 0 !
scripts/draw2_pileup_w_repeat.py |
14 7 + 7 - 0 !
scripts/draw_pileup_region.py |
8 4 + 4 - 0 !
scripts/draw_pileup_region_find_bridges.py |
8 4 + 4 - 0 !
scripts/fasta_to_fastq.py |
2 1 + 1 - 0 !
scripts/get_NCTC_json.py |
12 6 + 6 - 0 !
scripts/get_consensus_gfa.py |
8 4 + 4 - 0 !
scripts/get_draft_annotation.py |
20 10 + 10 - 0 !
scripts/get_draft_path.py |
16 8 + 8 - 0 !
scripts/get_draft_path_norevcomp.py |
2 1 + 1 - 0 !
scripts/get_single_strand.py |
4 2 + 2 - 0 !
scripts/interface_utils.py |
20 10 + 10 - 0 !
scripts/longest_path.py |
20 10 + 10 - 0 !
scripts/merge_hinges.py |
18 9 + 9 - 0 !
scripts/parallel_draw.sh |
6 3 + 3 - 0 !
scripts/parallel_draw_large.sh |
4 2 + 2 - 0 !
scripts/parse.py |
4 2 + 2 - 0 !
scripts/parse_alignment.py |
6 3 + 3 - 0 !
scripts/parse_qv.py |
2 1 + 1 - 0 !
scripts/parse_read.py |
2 1 + 1 - 0 !
scripts/pileup.ipynb |
20 10 + 10 - 0 !
scripts/pipeline_consensus.py |
22 11 + 11 - 0 !
scripts/pipeline_consensus_norevcomp.py |
20 10 + 10 - 0 !
scripts/pipeline_nctc.py |
22 11 + 11 - 0 !
scripts/pruning_and_clipping.py |
108 54 + 54 - 0 !
scripts/pruning_and_clipping_nanopore.py |
90 45 + 45 - 0 !
scripts/random_condensation.py |
52 26 + 26 - 0 !
scripts/repeat_annotate_reads.py |
2 1 + 1 - 0 !
scripts/run_mapping.py |
6 3 + 3 - 0 !
scripts/run_mapping2.py |
8 4 + 4 - 0 !
scripts/run_mapping3.py |
8 4 + 4 - 0 !
scripts/run_parse_alignment.py |
4 2 + 2 - 0 !
scripts/run_parse_read.py |
4 2 + 2 - 0 !
scripts/split_las.py |
2 1 + 1 - 0 !
scripts/unitig.py |
22 11 + 11 - 0 !
utils/run.sh |
8 4 + 4 - 0 !
57 files changed, 446 insertions(+), 446 deletions(-) |
use 2to3 to port to python3
Bug-Debian: https://bugs.debian.org/936704
|
| spdlog 1.5.0.patch | (download) |
src/consensus/CMakeLists.txt |
5 3 + 2 - 0 !
src/filter/CMakeLists.txt |
3 2 + 1 - 0 !
src/layout/CMakeLists.txt |
3 2 + 1 - 0 !
src/maximal/CMakeLists.txt |
3 2 + 1 - 0 !
4 files changed, 9 insertions(+), 5 deletions(-) |
fix ftbfs against spdlog 1.5.0
Bug-Debian: https://bugs.debian.org/952615
|
| networkx_update.patch | (download) |
scripts/pruning_and_clipping.py |
110 55 + 55 - 0 !
1 file changed, 55 insertions(+), 55 deletions(-) |
adapt to latest version of networkx
|
