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hinge 0.5.0-8
  • links: PTS, VCS
  • area: main
  • in suites: sid
  • size: 2,972 kB
  • sloc: cpp: 9,480; ansic: 8,826; python: 5,023; sh: 340; makefile: 10

Folder: scripts

d .. (parent)
- - rwxr-xr-x 1,717 Visualise_graph.py
- - rwxr-xr-x 1,818 add_groundtruth.py
- - rw-r--r-- 1,496 add_groundtruth_json.py
- - rw-r--r-- 946 clip_ends.py
- - rw-r--r-- 2,614 compute_n50_from_draft.py
- - rwxr-xr-x 5,482 condense_graph.py
- - rwxr-xr-x 6,886 condense_graph_and_annotate.py
- - rwxr-xr-x 8,841 condense_graph_annotate_clip_ends.py
- - rwxr-xr-x 7,179 condense_graph_create_gfa_compute_n50.py
- - rwxr-xr-x 6,553 condense_graph_with_gt.py
- - rwxr-xr-x 1,689 connected.py
- - rwxr-xr-x 1,237 correct_head.py
- - rwxr-xr-x 808 create_bandage_file.py
- - rwxr-xr-x 1,835 create_hgraph.py
- - rw-r--r-- 874 create_hgraph_nogt.py
- - rw-r--r-- 1,252 download_NCTC_pipeline.py
- - rwxr-xr-x 864 draft_assembly.py
- - rwxr-xr-x 864 draft_assembly_not_perfect.py
- - rwxr-xr-x 5,893 draw2.py
- - rwxr-xr-x 4,505 draw2_pileup.py
- - rwxr-xr-x 4,326 draw2_pileup_region.py
- - rwxr-xr-x 5,603 draw2_pileup_w_repeat.py
- - rwxr-xr-x 4,936 draw_pileup_region.py
- - rwxr-xr-x 4,984 draw_pileup_region_find_bridges.py
- - rwxr-xr-x 454 fasta_to_fastq.py
- - rw-r--r-- 1,906 get_NCTC_json.py
- - rwxr-xr-x 2,778 get_consensus_gfa.py
- - rwxr-xr-x 13,759 get_draft_annotation.py
- - rwxr-xr-x 15,149 get_draft_path.py
- - rwxr-xr-x 387 get_draft_path_norevcomp.py
- - rw-r--r-- 374 get_single_strand.py
- - rwxr-xr-x 3,761 interface_utils.py
- - rwxr-xr-x 1,482 longest_path.py
- - rwxr-xr-x 20,778 merge_hinges.py
- - rwxr-xr-x 581 parallel_draw.sh
- - rwxr-xr-x 392 parallel_draw_large.sh
- - rwxr-xr-x 1,284 parse.py
- - rwxr-xr-x 760 parse_alignment.py
- - rwxr-xr-x 314 parse_qv.py
- - rwxr-xr-x 658 parse_read.py
- - rw-r--r-- 17,344 pileup.ipynb
- - rwxr-xr-x 3,373 pipeline_consensus.py
- - rwxr-xr-x 3,175 pipeline_consensus_norevcomp.py
- - rwxr-xr-x 2,547 pipeline_nctc.py
- - rwxr-xr-x 47,868 pruning_and_clipping.py
- - rwxr-xr-x 42,386 pruning_and_clipping_nanopore.py
- - rwxr-xr-x 9,335 random_condensation.py
- - rwxr-xr-x 3,521 repeat_annotate_reads.py
- - rwxr-xr-x 1,127 run_mapping.py
- - rwxr-xr-x 1,401 run_mapping2.py
- - rwxr-xr-x 1,404 run_mapping3.py
- - rwxr-xr-x 406 run_parse_alignment.py
- - rwxr-xr-x 355 run_parse_read.py
- - rwxr-xr-x 634 split_las.py
- - rwxr-xr-x 4,107 unitig.py